Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d22
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136...    30   1.5  
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737...    29   2.6  
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    28   5.9  
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448...    28   5.9  
12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078     28   7.8  
12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754     28   7.8  

>07_03_0336 +
           16911947-16912144,16912636-16912692,16912917-16913696,
           16914666-16914713,16914795-16916032,16916776-16916860,
           16917323-16917379
          Length = 820

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -1

Query: 417 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDN 316
           VKHSD +P T + ANV SKS  I   P+ G  +N
Sbjct: 657 VKHSDLKPGTVSAANVDSKS--ISAKPSTGSFEN 688


>01_06_1674 +
           39072861-39073260,39073288-39073358,39073659-39073716,
           39074604-39074659,39075179-39075400
          Length = 268

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86  VLKHVRYISQF-KIQRTDCVPYGTPRKIK 169
           V++  R IS F K+QR D  P+GT RK+K
Sbjct: 208 VIEATRSISYFAKLQRGDWSPHGTARKLK 236


>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
            17147469-17147551,17147688-17147815,17147897-17147983,
            17148064-17148174,17148502-17148669,17148753-17148837,
            17148921-17149037,17149127-17149203,17149299-17149370,
            17150538-17150634,17150750-17150952,17151115-17151217,
            17151324-17151391,17151461-17151514,17151595-17151704,
            17151982-17152060,17152171-17152233,17153410-17153529,
            17153913-17153969,17154071-17154187,17156426-17156476,
            17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/97 (24%), Positives = 40/97 (41%)
 Frame = +2

Query: 62   YCFFRKSLVLKHVRYISQFKIQRTDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNENAKG 241
            + +  K + L H  +++ +K +  DC+    P K  D  L   +DK   +   +N+  K 
Sbjct: 750  HIYSEKLVHLPHCYFVNDYKQKNRDCLDPVCPHKRSDYGL--PEDK--FIFACFNQLYKM 805

Query: 242  EPAILTASAQKYDRESGGKLWKMLKLSPIPKLGESRI 352
            +P I         R     LW    L   P  GE+R+
Sbjct: 806  DPEIFDTWCNILKRVPNSALW----LLRFPAAGETRV 838


>01_06_1387 +
           36944138-36944147,36944272-36944333,36944825-36944865,
           36945217-36945286,36946146-36946826,36946907-36946981,
           36947057-36947163,36947264-36947370,36947463-36947522,
           36947616-36947689,36947788-36947838,36948009-36948058,
           36948079-36948123,36948161-36948221,36948284-36948349,
           36948700-36948789,36948875-36948940,36949039-36949134,
           36949219-36949308,36949371-36949388
          Length = 639

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 LQVHKSMIENPVVNFGKC*NYHPSRNWENQEYFS 359
           LQVH S + N ++N  +C + +P   W    Y S
Sbjct: 13  LQVHSSPLTNRLINHARCKDQNPYLRWYIWNYES 46


>12_02_0940 - 24593571-24594214,24594316-24594333,24594970-24595078
          Length = 256

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 489 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 346
           D   T    RI  LFS +  L++ V+H   +   A N N G++  ++L
Sbjct: 35  DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82


>12_02_0936 + 24565124-24565232,24565869-24565886,24565988-24566754
          Length = 297

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 489 DIAPTPAAIRIASLFSSNCSLTL*VKHSDPRPDTATNANVGSKSKNIL 346
           D   T    RI  LFS +  L++ V+H   +   A N N G++  ++L
Sbjct: 35  DEGETTLQARIQHLFSESKKLSINVEHIIAQVSQAVNMNCGAEENSLL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,923,864
Number of Sequences: 37544
Number of extensions: 380293
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)