Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d22
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.38 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.38 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -1

Query: 453 SLFSSNCSLTL*VKHS--DPRPDTATNANVGSKSKNILDSP-NFGMGDNFNIFQSLP 292
           SL +SN S++     S  D +PDTA+  N G+ S +  +SP +F  G + N+  + P
Sbjct: 31  SLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSP 87



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 179 LCGHKDKGLVLGVYYNENAKG 241
           +CG +  G   GVY  E  KG
Sbjct: 112 ICGDRASGKHYGVYSCEGCKG 132


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -1

Query: 453 SLFSSNCSLTL*VKHS--DPRPDTATNANVGSKSKNILDSP-NFGMGDNFNIFQSLP 292
           SL +SN S++     S  D +PDTA+  N G+ S +  +SP +F  G + N+  + P
Sbjct: 31  SLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSP 87



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 179 LCGHKDKGLVLGVYYNENAKG 241
           +CG +  G   GVY  E  KG
Sbjct: 112 ICGDRASGKHYGVYSCEGCKG 132


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 197 CLYDHKVSDPLFCAAFRMAHSQY 129
           C Y+  V  PLFC  + M  S +
Sbjct: 113 CYYETWVLGPLFCQIYAMLGSLF 135


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 197 CLYDHKVSDPLFCAAFRMAHSQY 129
           C Y+  V  PLFC  + M  S +
Sbjct: 79  CYYETWVLGPLFCQIYAMLGSLF 101


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 176 KLCGHKDKGLVLGVYYNENAKG 241
           ++CG K  G   GV+  E  KG
Sbjct: 68  RVCGDKASGFHYGVHSCEGCKG 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,985
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)