Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d22
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07320.1 68415.m00839 SWIM zinc finger family protein contain...    31   0.93 
At5g37880.1 68418.m04564 hypothetical protein predicted protein,...    29   2.8  
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           28   5.0  
At2g29610.1 68415.m03597 F-box family protein contains Pfam prof...    28   5.0  
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r...    27   8.7  
At1g45150.1 68414.m05176 expressed protein                             27   8.7  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   8.7  

>At2g07320.1 68415.m00839 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 534

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 442 RKQRSYPNRCWCGCNISS-TTES*SYTFRILWKCRSRSG 555
           R+  S P  CWCG +IS+  ++S +  +R  ++C   +G
Sbjct: 242 RRVESVPKLCWCGASISALISKSATNPYRRYYRCAYAAG 280


>At5g37880.1 68418.m04564 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 154

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 436 IGRKQR--SYPNRCWCGCNISS-TTES*SYTFRILWKC 540
           +G+++R    P  CWCG  IS+  ++S S  +R  ++C
Sbjct: 14  VGQRRRFVGVPKMCWCGATISALMSKSASNPYRRYYRC 51


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 116 IEKYIEHVSKLDFCEKNNILTFLILKNNTET 24
           IE Y+  + +   C K  I T  I KN +ET
Sbjct: 478 IENYVHRIGRTGRCGKTGIATTFINKNQSET 508


>At2g29610.1 68415.m03597 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 243 NLPFLLQVHKSMIENPVVNFGKC*NYHPS 329
           NLP LLQ+ + +IE  + +F +C  Y PS
Sbjct: 97  NLPILLQLPEELIERIIAHFPQC--YSPS 123


>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
           protein-related identical to cDNA bHLH transcription
           factor (bHLH gamma gene) GI:32562999; weak similarity to
           bHLH transcription activator anthocyanin 1 [Petunia x
           hybrida] GI:10998404
          Length = 720

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 77  KSLVLKHVRYISQFKIQRTDCVPYGTP 157
           K++ ++    ++Q+K +R+D +PY TP
Sbjct: 196 KAMDVEESNILTQYKTRRSDSMPYNTP 222


>At1g45150.1 68414.m05176 expressed protein
          Length = 643

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 189 IKTKVLSWEFIIMKTPKVNLPFLLQVHKSMIEN 287
           IK ++  WEFII  TP  +LP ++ V  ++IE+
Sbjct: 265 IKLRLTVWEFIIPVTP--SLPAVIGVSDTVIED 295


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
 Frame = -1

Query: 366 SKSKNILDSPNF--GMGDNFNIFQSLPPD-------SLSYFCALAVRMAGSPLAFSL**T 214
           SK  +I D   F   +  N N+ + LP D       ++S    L ++   SP  +     
Sbjct: 207 SKFGDIFDEDFFIYALSKNVNVVKELPKDVLERYNYNISSIVNLRLKAWSSPAYYLQKVL 266

Query: 213 PKTRPL-SL*PQSFGSFILRGVPYGTQSVRCILN*EIYRTCFKTRLLRKK 67
           P+   L ++    F + +   VP   Q +RC+ N E  R     RLL +K
Sbjct: 267 PQLLRLGAVRVAPFSNRLAHAVPAHIQGLRCLANFEALRFAEPIRLLAEK 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,753
Number of Sequences: 28952
Number of extensions: 333171
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)