Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d21
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   9.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   9.3  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 60  KYTDTNRSIGTIHVRRKTI--LWPLFEDVGNVKHQAID 167
           KY + +     IH +   +  LW  F  +GNV++Q  D
Sbjct: 806 KYAEMHAKFIQIHTKNSDVPTLWDRFLALGNVRYQLKD 843


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 428 QRTNQEAQSAVPNY*QDLSRKHIKISSPS 514
           Q TN  + S +PN   D+S +H KIS  S
Sbjct: 508 QLTNSVSVSKMPNTDADVSLEHAKISFDS 536


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 447 HKALFLIISRIYQENT*KYHHLAIINSYHI 536
           H + F ++ R +QE   KYHH  +++ Y++
Sbjct: 872 HTSQFAVL-REFQEIAEKYHHQNLLSCYYL 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,426
Number of Sequences: 5004
Number of extensions: 38918
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)