Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d21
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical p...    28   6.5  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   8.6  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   8.6  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   8.6  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   8.6  

>U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical
           protein C32B5.4 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 423 LLNAQTKKHKALFLIISRIYQENT*KYHHLAI 518
           +L+ Q K H+A+  ++ R++   T K +HLAI
Sbjct: 144 VLSYQRKMHEAMKYLLGRLFGGKTVKVNHLAI 175


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 154 CFTLPTSSNSGHKIVFRRTWIV-PIDRFVSVYFTFSSYYH 38
           C  L   +N   K+VF+R WIV PI   +S  F+  SY H
Sbjct: 403 CVVLFLRNNQYAKMVFQRHWIVYPI--VISCIFSVVSYPH 440


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 154 CFTLPTSSNSGHKIVFRRTWIV-PIDRFVSVYFTFSSYYH 38
           C  L   +N   K+VF+R WIV PI   +S  F+  SY H
Sbjct: 403 CVVLFLRNNQYAKMVFQRHWIVYPI--VISCIFSVVSYPH 440


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 154 CFTLPTSSNSGHKIVFRRTWIV-PIDRFVSVYFTFSSYYH 38
           C  L   +N   K+VF+R WIV PI   +S  F+  SY H
Sbjct: 403 CVVLFLRNNQYAKMVFQRHWIVYPI--VISCIFSVVSYPH 440


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 154 CFTLPTSSNSGHKIVFRRTWIV-PIDRFVSVYFTFSSYYH 38
           C  L   +N   K+VF+R WIV PI   +S  F+  SY H
Sbjct: 331 CVVLFLRNNQYAKMVFQRHWIVYPI--VISCIFSVVSYPH 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,883
Number of Sequences: 27780
Number of extensions: 210164
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)