Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d18
         (452 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015559F4 Cluster: PREDICTED: similar to nuclear po...    35   0.94 
UniRef50_Q0RJW0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_Q3W7W4 Cluster: Putative uncharacterized protein; n=1; ...    31   8.7  

>UniRef50_UPI00015559F4 Cluster: PREDICTED: similar to nuclear pore
           membrane glycoprotein 210-like (LOC91181); n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           nuclear pore membrane glycoprotein 210-like (LOC91181) -
           Ornithorhynchus anatinus
          Length = 531

 Score = 34.7 bits (76), Expect = 0.94
 Identities = 24/66 (36%), Positives = 28/66 (42%)
 Frame = +1

Query: 253 GRALKPSASATPTWRLLGELTCHPQRHTRARTNLSSR*RXXRPPRPTSGAPAPSRPILXC 432
           G A KP   A     L G  + H    +R R  L  R     PPRPT  +P P+ P   C
Sbjct: 147 GEARKPPRPAGRAPLLCGTASLHCFCPSRGRP-LGHR-EAGEPPRPTRTSPPPAGPFSGC 204

Query: 433 AKRAGD 450
             R GD
Sbjct: 205 PGRPGD 210


>UniRef50_Q0RJW0 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 488

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 GRALKPSASATPTWRLLGELTCHP-QRH 333
           GR+L PSA+A   W LLGE   H  QRH
Sbjct: 427 GRSLDPSAAAIVLWVLLGEFPYHAWQRH 454


>UniRef50_Q3W7W4 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 411

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 271 SASATPT-WRLLGELTCHPQR--HT--RARTNLSSR*RXXRPPRPTSGAPAPSRP 420
           SA+AT   W  LG    HP R  HT  + +    S     RP  PT GAPAPS P
Sbjct: 244 SATATARGWPFLG----HPDRAEHTDQQGQAGQPSGTSTPRPTNPTPGAPAPSAP 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,888,142
Number of Sequences: 1657284
Number of extensions: 4080105
Number of successful extensions: 13876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13862
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)