Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d18
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703     28   3.1  
08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828     27   5.3  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   5.3  
03_04_0243 + 19298293-19299117                                         27   9.3  

>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
          Length = 379

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +2

Query: 26  LARATQPPRPXXXXXXXXXXXXXXDDEGTGRRRPGEPLAGLDG*VW 163
           LARA+ PPR                  G G R PG  L GL+   W
Sbjct: 288 LARASPPPRVCARGWGRTEQVPVVASSGNGVRLPGFALHGLEADAW 333


>08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828
          Length = 188

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 ALKPSASATPTWRLLGELTCHPQRHTRAR 345
           AL P AS   TWRLLG     P+R  RAR
Sbjct: 83  ALAPFASPVVTWRLLG----RPRRGGRAR 107


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 289 TWR-LLGELTCHPQRHTRART 348
           +W+ L G + CHP+RH R  T
Sbjct: 77  SWKALFGHMRCHPERHWRGIT 97


>03_04_0243 + 19298293-19299117
          Length = 274

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 229 RAPDGLWTXXXXXXXXXXXXGPPYSSIESG*RLSGPSPSCSLIVPTE*RSGGVM 68
           RAP   W              PP SS  +  R +  S +CS + P+  RS  ++
Sbjct: 179 RAPGAAWAAAMAPTSWSRTSAPPASSSPTSPRRARSSLTCSRVAPSTPRSATLL 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,404
Number of Sequences: 37544
Number of extensions: 141037
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)