Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d18
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   29   1.4  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)                     28   4.2  

>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 17   APRLARATQPPRPXXXXXXXXXXXXXXDDEGTGRRRPGEPLAGLD 151
            A ++ R  +P R               DDEGTGRRR G     +D
Sbjct: 1088 ASQIGRRNEPDREQPKQRVGRRDERDPDDEGTGRRRRGRERDDID 1132


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 379 PPRPTSGAPAPSRPILXCAKRA 444
           PPRPT   PAP RP L   + A
Sbjct: 416 PPRPTPARPAPPRPTLTTKETA 437


>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
          Length = 431

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 271 SASATPTWRLLGELTCHP--QRHTRARTNLSSR*RXXRPPRPTSGAPAPSRP 420
           S SA P  +L  EL   P  QR   ART +++     R  R TS  P  +RP
Sbjct: 7   STSAQPDEQLAQELAQEPGKQRQESARTPVAALPAAARDARITSPEPPATRP 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,403
Number of Sequences: 59808
Number of extensions: 124563
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)