Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d18
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36980.1 68417.m05240 expressed protein                             30   0.84 
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    29   1.9  
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ...    27   7.8  

>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 322 PQRHTRARTNLSSR*RXXRPPRPTSGAPAPSRPILXCAKRAGD 450
           P+RH R+R+   SR R  R     S + +PSR +    KR  D
Sbjct: 495 PRRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHAD 537


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 367 RXXRPPRPTSGAPAPSRPIL 426
           R  +P RP+SG P+P+ PIL
Sbjct: 39  RTSQPQRPSSGKPSPTPPIL 58


>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 521

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 322 PQRHTRART-NLSSR*RXXRPPRPTSGAPAPSRPI 423
           PQ H+ A + + ++  R   PP+P +G+ +P +PI
Sbjct: 288 PQEHSVAVSRSFTNPERRVSPPKPVNGSISPPKPI 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,119,784
Number of Sequences: 28952
Number of extensions: 83381
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)