Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d13
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        36   0.006
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   3.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   5.0  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   6.6  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 205  PVFASIDKVNMLVDKAEGVNKVPSMYSRKQAPDLPTWIMYDKNILRFQGFFQQSLHEM-R 381
            P++AS DKV+ + D+ +G+N +   Y RK+  +LP      K+++  Q     S  ++  
Sbjct: 3702 PLYASADKVSSIRDQQKGINDLIE-YCRKKRTELPELSYCFKHLVSLQSLKSISRTQVDL 3760

Query: 382  SASHILRKVDIFFFLEDGTIKVIEPKTEN 468
            +    L  ++    L D  +  IE  T+N
Sbjct: 3761 TNDEFLNLMNFVLNLFDSLLSSIETATKN 3789


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
 Frame = +1

Query: 274  SMYSRKQAPDLPTWIMYDK---NILRFQGFFQQSLHEMRSASHILRKVDIFFFLED---- 432
            S+ S KQ   L  +++      N+   +G+ +Q    + +A  +L+ V++ F L+     
Sbjct: 751  SLLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGPFPV 810

Query: 433  GTIKVIEPKTENSGLSQGTLISRQRIRLPFSYDMYYDVL--------DLNIGREVTFY 582
            G    +  K EN G+    L+   R+R  F   +YYDV+        DL +   +TFY
Sbjct: 811  GIYNDLIIKLENLGIR---LVVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFY 865


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 454 PKTENSGLSQGTLISRQRIRLPFSYDMYYDVLDLNIGREVTF 579
           P T N  L    L+S   +    S D  YD+++ N G +  F
Sbjct: 447 PSTRNYALIGRKLLSNDLLHSSLSTDALYDIVEKNHGSQGFF 488


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 421 FLEDGTIKVIEPKTENSGLSQGTL 492
           +LE+ +IK IE     SGLS+G L
Sbjct: 66  YLEEASIKRIEKSQYFSGLSEGAL 89


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 490 LISRQ-RIRLPFSYDMYYDVLDLNIGREVTFYGKTF 594
           ++SR  R+R+ +    + D LDLN+   ++F  KTF
Sbjct: 574 IVSRHPRLRIAYFAQHHVDTLDLNL-NALSFLAKTF 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,155
Number of Sequences: 5004
Number of extensions: 45464
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)