Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d13
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                    100   8e-22
SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  

>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score =  116 bits (279), Expect = 2e-26
 Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 12/170 (7%)
 Frame = +1

Query: 142 LPLLPGYGTNPLLGKKNFGVRPVFASIDKVNMLVDKAE---GVNKVP--------SMYSR 288
           LP LPG   +  LGK  F     F   + V+  V +A+   G + +P        S Y +
Sbjct: 3   LPFLPGQVFDRKLGKTKFHKTHQFDYRNDVSSYVGEAKCGIGGDPLPGQKLKPRHSHYPK 62

Query: 289 KQAPDLPTWIMYDKNILRFQGFFQQSLHEMRSASHILRKVDIFFFLEDGTIKVIEPKTEN 468
               + P W+ +D+ +L F  +FQ+++HE R   + +RK  I+F LED +I+V EPK +N
Sbjct: 63  GVGAEAPAWVAFDRQVLCFDAYFQEAVHEKREEQYRIRKCKIYFHLEDDSIQVNEPKVDN 122

Query: 469 SGLSQGTLISRQRIRL-PFSYDMYYDVLDLNIGREVTFYGKTFKIVNCDN 615
           SG+ QGTLI R RI L P + D +Y V   NIG+E+  Y + FK+  CD+
Sbjct: 123 SGIPQGTLIRRHRIPLPPPNDDQFYTVEHFNIGKEIALYSRIFKVTGCDD 172



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 33/96 (34%), Positives = 47/96 (48%)
 Frame = +1

Query: 325 DKNILRFQGFFQQSLHEMRSASHILRKVDIFFFLEDGTIKVIEPKTENSGLSQGTLISRQ 504
           + N+LRF G     L+  R    + R+  I +FL D TI V EP   NSG+  G  + R 
Sbjct: 308 ESNVLRFVG----RLNTTRPID-MDRRFIISYFLSDDTILVFEPPQRNSGILGGKFLERG 362

Query: 505 RIRLPFSYDMYYDVLDLNIGREVTFYGKTFKIVNCD 612
            I+ P +   Y    DL IG  V F+   F +++ D
Sbjct: 363 SIKKPNAMSSYV-AQDLFIGATVQFFKHEFVLIDAD 397



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 526 YDMYYDVLDLNIGREVTFYGKTFKIVNCDN 615
           Y  YY   DL IG  +  +G+ F++ +CD+
Sbjct: 207 YTDYYHDSDLTIGSVLNIWGRKFQVCDCDD 236


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score =  100 bits (240), Expect = 8e-22
 Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
 Frame = +1

Query: 253 EGVNKVPSM-YSRK-QAPD---LPTWIMYDKNILRFQGFFQQSLHEMRSASHILRKVDIF 417
           E  N  PS+ Y +K QAP    +P  + +DK +L F G+F+Q++HE  +    +R V I+
Sbjct: 137 ELANIKPSLTYGQKVQAPPEDFVPAHVAFDKKVLLFHGYFKQTVHESSNEYFRVRPVKIY 196

Query: 418 FFLEDGTIKVIEPKTENSGLSQGTLISRQRIRLPFSYDMYYDVLDLNIGREVTFYGKTFK 597
           ++LED +I V+EP  ENSG+ QG LI RQR+      D Y+   DLN+G  VTFYGK F 
Sbjct: 197 YYLEDDSIAVVEPVVENSGIPQGKLIKRQRLPKNDLGD-YWHWKDLNLGINVTFYGKVFF 255

Query: 598 IVNCD 612
           I +CD
Sbjct: 256 ICDCD 260


>SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 317 SCMIRTFYGFKGSFNNHCMKCGQHL 391
           +C+ +    F G F+  C KC QHL
Sbjct: 274 ACLQKWLDSFHGMFSRKCTKCNQHL 298


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 525 TERQTYSLATYQSTLRQSAILSLRLYNLYS 436
           T+R+T  ++  Q T+R S +LS RL  L S
Sbjct: 288 TDRKTQKMSLSQDTMRMSTVLSTRLIGLDS 317


>SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 334 ILRFQGFFQQSL-HEMRSASHILRKVDIFF--FLEDGTIKVIEPKTENSGLSQGTLISRQ 504
           I  F GF   S+ HE  S    LR++   F     DGT+++I+ K     LSQG  I+  
Sbjct: 229 IANFPGFSVMSVKHE--SFGGCLRRLCFTFDSLAADGTLRIIDRKKHIFKLSQGEYIAPA 286

Query: 505 RIRLPFSYDMY 537
           +I+  +   M+
Sbjct: 287 KIQNAYLRSMF 297


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 364  SLHEMRSASHILRKVDIFFFLEDGTIKVIEPKTE 465
            S+HE++++ H +   ++ F ++ GTI+VI P+ E
Sbjct: 1733 SVHEIKASDHSVDSPEMVFQIDRGTIEVI-PRNE 1765


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,575
Number of Sequences: 59808
Number of extensions: 296822
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)