Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d13
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    34   0.086
At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At5g25757.1 68418.m03055 expressed protein                             29   2.4  
At5g25754.1 68418.m03054 expressed protein                             29   2.4  
At5g27600.1 68418.m03305 AMP-binding protein, putative similar t...    28   4.3  
At2g25470.1 68415.m03050 leucine-rich repeat family protein cont...    27   9.9  
At1g30515.1 68414.m03733 expressed protein                             27   9.9  

>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
 Frame = +1

Query: 136 PRLPLLPGYGTNPLLGKKNFGVRPVFASIDKVNMLVDKAEG-VNKVPSMYSRKQAPDLPT 312
           P   L  GYG     G     +  VF+ +  V + +   E  +  VP M     + D+P 
Sbjct: 410 PASNLSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPR 469

Query: 313 WIMYDKNILRFQGFFQ-QSLHEMRSASHILRKVDIFFFLEDGTIKVIEPKTENSGLSQGT 489
             +  +    F G+ + Q L +           DI  + EDG++K+I+ K     LSQG 
Sbjct: 470 GEICLRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGE 529

Query: 490 LISRQRIRLPFS 525
            ++ + +   +S
Sbjct: 530 YVAVENLENTYS 541


>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 709

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 439 IKVIEPKTENSGLSQGTLISRQRIRLPFSYDMYYDVLDLNIGREVTFY 582
           IK +   T + GL+   +   Q+  L FSY++ Y +L   +GR    Y
Sbjct: 137 IKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLY 184


>At5g25757.1 68418.m03055 expressed protein
          Length = 514

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 256 GVNKVPSMYSRKQAPDLPTWIMYDKNILR-FQGFFQQSLHEMRSASHILRKVDIFFFLED 432
           GV     +YS      L  ++  D+  LR     ++   H + S   I+   DI FF+ +
Sbjct: 417 GVRTFLKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDSDGRIISNADIDFFINN 476

Query: 433 GTIKVIEPK 459
             I V+E K
Sbjct: 477 DMIYVVESK 485


>At5g25754.1 68418.m03054 expressed protein
          Length = 514

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 256 GVNKVPSMYSRKQAPDLPTWIMYDKNILR-FQGFFQQSLHEMRSASHILRKVDIFFFLED 432
           GV     +YS      L  ++  D+  LR     ++   H + S   I+   DI FF+ +
Sbjct: 417 GVRTFLKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDSDGRIISNADIDFFINN 476

Query: 433 GTIKVIEPK 459
             I V+E K
Sbjct: 477 DMIYVVESK 485


>At5g27600.1 68418.m03305 AMP-binding protein, putative similar to
           AMP-binding protein (MF39P) gi:1617274 from Brassica
           napus, long-chain-fatty-acid--CoA ligase - Brassica
           napus, EMBL:Z72152; contains Pfam AMP-binding enzyme
           domain PF00501
          Length = 700

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 268 VPSMYSRKQAPDLPTWIMYDKNILRFQGFF--QQSLHEMRSASHILRKVDIFFFLEDGTI 441
           VP M         P   +  +  + F+G++  ++   E+      L   DI  +L  G +
Sbjct: 484 VPEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRL 543

Query: 442 KVIEPKTENSGLSQGTLISRQRI 510
           K+I+ K     L+QG  I+ ++I
Sbjct: 544 KIIDRKKNIFKLAQGEYIAPEKI 566


>At2g25470.1 68415.m03050 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 910

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +1

Query: 178 LGKKNFGVRPVFASIDKVNMLVDKAEGVNKVPSMYSRKQAPDLPTWIMYDKNILRFQGFF 357
           L   +F + P+   +  + +    A  + K P     K    LP  +  + +   FQG+F
Sbjct: 350 LQNNSFTIFPIPTMVHNLQIFDFSANNIGKFPD----KMDHALPNLVRLNGSNNGFQGYF 405

Query: 358 QQSLHEMRSASHI 396
             S+ EM++ S +
Sbjct: 406 PTSIGEMKNISFL 418


>At1g30515.1 68414.m03733 expressed protein
          Length = 144

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 485 PCDNPLFSVFGSITFIVPSSRKKKISTLRKI*DADRI 375
           P  N L S+    + I+PS+ K  + TL K  D DR+
Sbjct: 59  PSSNDLTSISSPSSSILPSAVKSPMKTLSKDQDDDRV 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,794
Number of Sequences: 28952
Number of extensions: 217525
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)