Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10d10
(722 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 249 5e-65
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 181 1e-44
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 172 8e-42
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 166 4e-40
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 158 1e-37
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 154 2e-36
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 144 1e-33
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 140 3e-32
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 139 6e-32
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 128 2e-28
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 123 4e-27
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 112 7e-24
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 102 8e-21
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 95 2e-18
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 91 3e-17
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 72 1e-11
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 4e-06
UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1; Staphy... 46 0.001
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 45 0.002
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 43 0.009
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 42 0.020
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 42 0.020
UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1; Sulfol... 40 0.047
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 40 0.047
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 40 0.062
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 40 0.082
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.14
UniRef50_A0LE03 Cluster: Serine/threonine protein kinase; n=1; M... 38 0.33
UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria n... 37 0.58
UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;... 35 1.8
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 34 3.1
UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497 ... 34 4.1
UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3; Bacill... 34 4.1
UniRef50_A0Z0U9 Cluster: Beta-glucosidase; n=1; marine gamma pro... 34 4.1
UniRef50_Q01GC3 Cluster: Predicted E3 ubiquitin ligase; n=1; Ost... 34 4.1
UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n... 33 7.1
UniRef50_A3SK38 Cluster: Putative ABC transport system, permease... 33 9.4
UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putati... 33 9.4
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 249 bits (610), Expect = 5e-65
Identities = 127/206 (61%), Positives = 150/206 (72%), Gaps = 1/206 (0%)
Frame = +2
Query: 44 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 223
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 224 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 403
YHTKVRAGRGF+L E+R AG++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LI
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 404 LFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGA 580
LFP K KG+++ EE KLATQL GP+MPV+ K AR ITE+EKNFKA+ LR A
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMA 185
Query: 581 RSIAKLVGIRAKRLKDAAENPDDVTK 658
R+ A+L GIRAKR K+AAE DV K
Sbjct: 186 RANARLFGIRAKRAKEAAE--QDVEK 209
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 181 bits (441), Expect = 1e-44
Identities = 91/199 (45%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Frame = +2
Query: 38 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 217
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 218 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 397
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 398 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 574
L++FP + ++V G++ EE ATQ++G MP+ +T D K FKAY +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181
Query: 575 GARSIAKLVGIRAKRLKDA 631
R+ A+ G RAKR +A
Sbjct: 182 LERTNARHAGARAKRAAEA 200
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 172 bits (418), Expect = 8e-42
Identities = 89/201 (44%), Positives = 122/201 (60%), Gaps = 1/201 (0%)
Frame = +2
Query: 38 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 217
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 218 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 397
+RY+TK+R+GRGFT+ E++AAGL +AR++GI VD RRRNKS ESL++NV+RIK Y+AR
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQAR 122
Query: 398 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRG 577
L++ PK K K + + A + ++P+ R IT +EK F AY+ LR
Sbjct: 123 LVVIPKLTKKNKDKKVDLSNVEAVRQVQSVLPLPAGTEAEKPRAITSEEKEFNAYETLRK 182
Query: 578 ARSIAKLVG-IRAKRLKDAAE 637
AR + G ++A+ K E
Sbjct: 183 ARGTHRAAGKVKARIAKKEEE 203
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 166 bits (404), Expect = 4e-40
Identities = 91/197 (46%), Positives = 119/197 (60%), Gaps = 1/197 (0%)
Frame = +2
Query: 32 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 211
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALRAKKSRQLAPKPTEL-LRPLVHC 59
Query: 212 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 391
P+ RY +KVRAGRGFT +E++ AG++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY+
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYK 119
Query: 392 ARLILFPKGK-KVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 568
+RLI P K KVLK + + L V+ K A + E+EK F+A+
Sbjct: 120 SRLIFLPDSKNKVLKIDDGKN-----------LNVVKVVPGKVKALKVGEEEKKFEAFVT 168
Query: 569 LRGARSIAKLVGIRAKR 619
LR AR K GIR KR
Sbjct: 169 LRRARCDEKFAGIRMKR 185
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 158 bits (383), Expect = 1e-37
Identities = 96/217 (44%), Positives = 127/217 (58%), Gaps = 14/217 (6%)
Frame = +2
Query: 32 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 193
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 194 RPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQ 373
RP V CPTVRY+ K R GRGF+L E++AAG+ P +ARTIGI VD RR+NKS E + INVQ
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQ 130
Query: 374 RIKEYRARLILFP-KGKKVLKGEANEEERKLATQLR-----GPLMPVQQPAPKSVARPIT 535
R+K Y ++L+LFP KK KG+A EEE K ATQ R + + PA + R +T
Sbjct: 131 RLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRYGTAAVGGLVTPA-REAPRKVT 189
Query: 536 EDEKNFKAYQYLRGARSIAKLVGIRAKRL--KDAAEN 640
E+E K Y++L+ S + R +R K+A EN
Sbjct: 190 EEESTKKMYKFLKKNHSAVRFFRARNRRAARKEAKEN 226
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 154 bits (373), Expect = 2e-36
Identities = 85/193 (44%), Positives = 119/193 (61%)
Frame = +2
Query: 59 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 238
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 239 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKG 418
RAGRGFTL E++A G+ P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F K
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKK 129
Query: 419 KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKL 598
K + + E+ AT PV+QPAP+S R + E+ AY+ LR AR+ K
Sbjct: 130 TKASEVASFEQVDVSAT------FPVEQPAPESGLRAVEVPEQT--AYRTLRLARNEKKY 181
Query: 599 VGIRAKRLKDAAE 637
GIR KR K+ AE
Sbjct: 182 KGIREKRAKEKAE 194
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 144 bits (350), Expect = 1e-33
Identities = 89/214 (41%), Positives = 116/214 (54%), Gaps = 17/214 (7%)
Frame = +2
Query: 68 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 247
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 248 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK-- 421
RGFTL E++ AG+ ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 90 RGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPRKSGQ 149
Query: 422 -KVLKGEANEEERKLA-----------TQLRGPLMPVQQPAPKSVARPITEDE---KNFK 556
K L A+E A T G + P++ + + DE
Sbjct: 150 FKKLDSSADEVNAAKAAFAAEGKTEGYTTKLGAIFPIKNISAAEAVTEVKRDELPKGEEA 209
Query: 557 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 658
AY+ LR RS A+ GIR KR K AE K
Sbjct: 210 AYRRLRETRSEARYKGIREKRAKAKAEEESAAKK 243
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 140 bits (339), Expect = 3e-32
Identities = 83/205 (40%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Frame = +2
Query: 44 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 223
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 224 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 403
Y+ K R GRGFTL E+ A G+N A +IGIAVD RR + S E+ QINV R+K+Y ++
Sbjct: 63 YNMKTRLGRGFTLEELSACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIV 122
Query: 404 LFP-KGKKVLKG-------EANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKA 559
L P KGKK KG A EE + L P++ IT +E+ F+A
Sbjct: 123 LQPRKGKKTKKGFAGIPNDSAREEFKALKNVSHEKAFPIKAQTLAVKTHVITPEERKFRA 182
Query: 560 YQYLRGARSIAKLVGIRAKRLKDAA 634
+ LR AK G +A + K +A
Sbjct: 183 FSTLRKQFIEAKNFGKKATKAKASA 207
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 139 bits (337), Expect = 6e-32
Identities = 84/206 (40%), Positives = 117/206 (56%), Gaps = 6/206 (2%)
Frame = +2
Query: 38 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 217
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 218 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 397
++Y++ + GRGF+L E++ AGLN FART+GI+VD RRRN + E L NV+R+K Y ++
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSK 120
Query: 398 LILFPK--GKK---VLKGEANEEERKLATQLRGPLMPVQQPAPK-SVARPITEDEKNFKA 559
L+L+P+ GK V+K NE Q P + Q PK A I+++ +
Sbjct: 121 LVLYPRVAGKPKNGVVKDSTNEVVAHPVAQNTNPEVLTFQRTPKREKATVISKELRAKNV 180
Query: 560 YQYLRGARSIAKLVGIRAKRLKDAAE 637
Y+ LR AK VG++ KR K A E
Sbjct: 181 YRRLRQEWYNAKFVGVKEKR-KQAKE 205
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 128 bits (308), Expect = 2e-28
Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Frame = +2
Query: 32 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 211
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 212 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 391
P+ RY+ K+R GRGFTL+E++ AGL AR++G+AVD RR NK ESL +NV R+K Y
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYL 119
Query: 392 ARLILFPKGKKVLKGEA-------NEEERKLA--TQLRGPLMPVQQPAPKSVARPITEDE 544
++L+LFP+ K KG A E+ R LA Q +MPV Q K R +TE +
Sbjct: 120 SKLVLFPRKKHAKKGFAGLPSDTPREKLRTLALTKQSVKKVMPVVQEFVKEPPREVTEKD 179
Query: 545 KNFKAYQYLRGARSIAK 595
+ Y LR AR AK
Sbjct: 180 TSVNVYHKLRVARKAAK 196
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 123 bits (297), Expect = 4e-27
Identities = 65/140 (46%), Positives = 82/140 (58%)
Frame = +2
Query: 8 PW*NSDVKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXX 187
PW ++M NN IPN H K W VKT+F+ PAR RR+ R
Sbjct: 16 PW--PFLEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEG 73
Query: 188 XLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQIN 367
LRPIVRCPTVRY+ K R GRGFT +E+ AAG +P AR GIAVD RR + ++ N
Sbjct: 74 PLRPIVRCPTVRYNMKTRLGRGFTPKELVAAGFDPALARFQGIAVDARRAHSKDAMVKQN 133
Query: 368 VQRIKEYRARLILFPKGKKV 427
V+R++ Y+ARLI KG+ V
Sbjct: 134 VERLQAYKARLIKVKKGETV 153
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 112 bits (270), Expect = 7e-24
Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 10/212 (4%)
Frame = +2
Query: 44 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 223
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 224 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 403
Y+ K R G+GFTL EI+A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L+
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLV 123
Query: 404 LFP----KGKKVLKG---EANE---EERKLATQLRGPLMPVQQPAPKSVARPITEDEKNF 553
+ P K K + G +A + E+ K QLR P ++ +++
Sbjct: 124 MIPLKKDKPKNGIGGIPADATKEVIEQHKERKQLRSIFKKGSSVKPFYETIETSKIDQSS 183
Query: 554 KAYQYLRGARSIAKLVGIRAKRLKDAAENPDD 649
AY+ LR A+ +A+ R ++ KD D
Sbjct: 184 SAYKTLRKAK-LAERRKNRQQQRKDIKRKSKD 214
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 102 bits (245), Expect = 8e-21
Identities = 54/121 (44%), Positives = 70/121 (57%)
Frame = +2
Query: 68 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 247
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 248 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 427
RGF+L+E+RAA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L K+
Sbjct: 71 RGFSLKELRAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKI 130
Query: 428 L 430
+
Sbjct: 131 V 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 95.1 bits (226), Expect = 2e-18
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2
Query: 191 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINV 370
+RPIVRCPTVRYHTKVR GRGF+L EIR AG++ ARTI I+VDP+++ K E +
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKKKKKKKERKKEKN 72
Query: 371 QRIKEYRARLILFPKGKKVLKGEANEEERK 460
+R+ E + I++PK +K + + +E +K
Sbjct: 73 ERVTETNQKDIIYPKREKEREKKGMKEGKK 102
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 90.6 bits (215), Expect = 3e-17
Identities = 57/158 (36%), Positives = 79/158 (50%)
Frame = +2
Query: 38 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 217
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 218 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 397
++Y+ R GRGFT E AGL+ AR +GIAVD RRR+ + E+ NV+RIK Y +
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGK 119
Query: 398 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 511
+ ++ K EA E K T+ +MP +P P
Sbjct: 120 ITIYESVK-----EARESGAKPYTK---EIMPFVKPKP 149
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +2
Query: 62 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 238
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 239 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSV 349
+ GRGF+++EI+ + + A + GI++D RR+ ++
Sbjct: 70 KLGRGFSIQEIKKSMIKLKTATSYGISIDKRRKKSNI 106
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 7e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 53 IPNGHFHKDWQRFVKTWFNQPARRYRRK 136
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +2
Query: 44 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 133
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein
L13e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 86
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +2
Query: 197 PIVRCPTVRYH----TKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQI 364
PIVR P +R H +R GRGF+ +E+ A GL+ A+ +G+ +D RRR +
Sbjct: 10 PIVRKPMLRKHGGLSPGLRVGRGFSKKELEAVGLDLKTAKKLGLRIDKRRRTIH----EW 65
Query: 365 NVQRIKEYRARL 400
NVQ +++Y ++
Sbjct: 66 NVQALRDYLTKI 77
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +2
Query: 236 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNK---SVESLQINVQRIKE 385
VR GRGF+L E+ AGL+ AR +G+ VD RRR +VE+L+ ++R++E
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLRE 75
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 42.7 bits (96), Expect = 0.009
Identities = 25/56 (44%), Positives = 28/56 (50%)
Frame = -3
Query: 336 RLRGSTAIPIVRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 169
++R S VRA T S V P P R L YR VG TIGR+ PA GRG
Sbjct: 388 KIRVSLTTLAVRARTMAITRTFNSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 194 RPIVRCPTVRYH---TKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQ 361
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD RR ++++
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERRETSWPQNIE 64
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 41.5 bits (93), Expect = 0.020
Identities = 21/57 (36%), Positives = 38/57 (66%)
Frame = +2
Query: 233 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 403
K++ GRGF++ EI+A L AR +GI VD RR++ + + NV+ ++EY ++++
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTRRKS----TWEWNVKALQEYVSKVV 69
>UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1;
Sulfolobus tokodaii|Rep: 50S ribosomal protein L13e -
Sulfolobus tokodaii
Length = 77
Score = 40.3 bits (90), Expect = 0.047
Identities = 18/68 (26%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +2
Query: 191 LRPIVRCPTVRYHTK---VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQ 361
+ PIV+ P R+ + + G+GF+L+E++ +G + A+ + + +D RR+ E+++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 362 INVQRIKE 385
+ ++++KE
Sbjct: 62 V-LKKLKE 68
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 40.3 bits (90), Expect = 0.047
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 239 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARL 400
R GRGF++ E+ AGLN AR +GI VD RR KSV + NV+ +K++ +L
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRR--KSVH--EENVETLKKFSEQL 74
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.9 bits (89), Expect = 0.062
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 191 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGL 286
LRP+V T++Y+ KV +GFTL E++AAG+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 39.5 bits (88), Expect = 0.082
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +2
Query: 236 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRN---KSVESLQINVQRIKEY 388
++ GRGF+ E++A GL AR +GI VD RR+ ++VE+L+ ++ +KE+
Sbjct: 30 LKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKTVHPENVEALRSWLKALKEH 83
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.14
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 197 PIVRCPTVRYHTKVRAGRGFTLREIR 274
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_A0LE03 Cluster: Serine/threonine protein kinase; n=1;
Magnetococcus sp. MC-1|Rep: Serine/threonine protein
kinase - Magnetococcus sp. (strain MC-1)
Length = 1143
Score = 37.5 bits (83), Expect = 0.33
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +2
Query: 323 DPRRRNKSVESLQINVQRIKEYRAR---LILFPKGKKVLKGEANEEERKLATQLRGPLM- 490
D +R N+ + LQ N +R + + R ++L P+ +++ A ER L+
Sbjct: 733 DEKRVNRLEQRLQANKERYRTTQLRGDEMLLKPEAGEIIPNSAPPRERDEPFMASQNLIT 792
Query: 491 PVQQPAPKSVARPITEDEKNFKA 559
P PAP+S A + EDEKNF A
Sbjct: 793 PAAPPAPRS-ASFLEEDEKNFTA 814
>UniRef50_Q0UNB4 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 365
Score = 36.7 bits (81), Expect = 0.58
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 410 PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 574
PKGKK K A EEE +A Q+ P+ PV K V ++E++K YQ L+
Sbjct: 297 PKGKKQKKKSAVEEEGSVAPQVAQPVKPVH--IDKFVRPTVSENKKPSSRYQILQ 349
>UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L13E - Ignicoccus hospitalis KIN4/I
Length = 96
Score = 35.1 bits (77), Expect = 1.8
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +2
Query: 191 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINV 370
L P++R + K+R GRGF+ E+ A GL+ A +GI +D RR K+V + NV
Sbjct: 29 LTPVLRKDAGK-KPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRR--KTVH--EWNV 83
Query: 371 QRIKEY 388
+ +K++
Sbjct: 84 EALKKW 89
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 34.3 bits (75), Expect = 3.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 320 VDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA---NEEERKLATQLRGPLM 490
+D R+ S+ SLQ + I+E +L+LFP+G + K + +A Q + P+
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ 200
Query: 491 PV 496
PV
Sbjct: 201 PV 202
>UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497
protein; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC495497 protein -
Strongylocentrotus purpuratus
Length = 802
Score = 33.9 bits (74), Expect = 4.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 283 SCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPS-CRTWSYGLSFLYSILLSAVSSSWLV 107
SC P+ T S ST + P +H+ T P C WS+ SF Y A L
Sbjct: 367 SCPPSSTSS--STSSKQETPPCPVDNHFETGPPEKCHKWSFIFSFTYLAFFRAAGYFGLE 424
Query: 106 KP-SFNKSLPILVEMSI 59
KP SF+ + +L+ + +
Sbjct: 425 KPTSFSNVVQLLLTLKL 441
>UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3;
Bacillus|Rep: Polyketide synthase type I - Bacillus
amyloliquefaciens
Length = 1917
Score = 33.9 bits (74), Expect = 4.1
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 365 NVQRIKEYRARLILF-----PKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARP 529
N +R+KEY ARL++F P+G L + + + +L LRG L V A SV
Sbjct: 895 NPERLKEYAARLLMFLKDEAPEGSGPLYDKIDTMQNQLEDALRGVLAEVLHVASGSV--- 951
Query: 530 ITEDEKNFKAY 562
+DE+++K +
Sbjct: 952 --DDEQDWKEF 960
>UniRef50_A0Z0U9 Cluster: Beta-glucosidase; n=1; marine gamma
proteobacterium HTCC2080|Rep: Beta-glucosidase - marine
gamma proteobacterium HTCC2080
Length = 824
Score = 33.9 bits (74), Expect = 4.1
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 236 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 403
V A G T RE++A G++ +FA T+ +A D R ++ ES + Q + Y ++
Sbjct: 153 VAAISGATAREVKATGIDWIFAPTVAVAQD-YRWGRTYESYSSDPQVVSSYAGGMV 207
>UniRef50_Q01GC3 Cluster: Predicted E3 ubiquitin ligase; n=1;
Ostreococcus tauri|Rep: Predicted E3 ubiquitin ligase -
Ostreococcus tauri
Length = 355
Score = 33.9 bits (74), Expect = 4.1
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +2
Query: 215 TVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRA 394
T R + + GR L I A +N AR +G R R + +N R E
Sbjct: 247 TTRVNAIIEYGRVPDLAAI-AREVNREEARKVGAGAKARIRAITATPSSLNSSRRFEIEV 305
Query: 395 RLILFPKGKKVLKGEANEEERKLATQL-RGPLMPVQQPAPKSVARPITEDEK 547
R + P G+ + +EEE + L ++P+ Q AP+ V P +DE+
Sbjct: 306 RRVRPPAGRTMDNHHDDEEEAEEERSLSEDEILPLSQAAPRYV--PTDDDEE 355
>UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n=1;
Streptomyces exfoliatus|Rep: Poly(3-hydroxybutyrate)
depolymerase - Streptomyces exfoliatus (Streptomyces
hydrogenans)
Length = 488
Score = 33.1 bits (72), Expect = 7.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 376 SLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNFTKSESS 248
++N DL + R + +Y NS+ SG WV GPN S +S
Sbjct: 143 AVNDDLATYYRDFGADVVYDNSSASGHAWVSPLGPNSCSSTTS 185
>UniRef50_A3SK38 Cluster: Putative ABC transport system, permease
protein; n=1; Roseovarius nubinhibens ISM|Rep: Putative
ABC transport system, permease protein - Roseovarius
nubinhibens ISM
Length = 287
Score = 32.7 bits (71), Expect = 9.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 708 FFLFIHFLGFTSLAVGAFVTSSGFSAASFNLLARIPTSLAMERAPL 571
F L L F + A+G ++T F+A +FN+ +P LA A L
Sbjct: 23 FSLLFGILKFPNFAIGGYITVGAFAAYTFNVPLGLPLPLAAAAAML 68
>UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putative;
n=6; Plasmodium|Rep: Nucleolar GTP-binding protein 1,
putative - Plasmodium chabaudi
Length = 682
Score = 32.7 bits (71), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 323 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEAN 445
DP R+ + +S +QR K Y+ ++ + + KK KGEA+
Sbjct: 618 DPTRKMRIYQSTSTEIQRKKAYKLNIVAYRQIKKGTKGEAD 658
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,862,559
Number of Sequences: 1657284
Number of extensions: 13462762
Number of successful extensions: 37846
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37814
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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