Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d07
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 28   2.9  
SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20)                 28   3.8  
SB_6983| Best HMM Match : rve (HMM E-Value=0.011)                      27   5.0  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_14897| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 255 WQPLPNIQLPNFLYINPINASTKVEPPRTRSQLESSGKL 139
           W P     L NF+  NP+N  T +   RT S L SS +L
Sbjct: 698 WNPFDTDTLGNFIKWNPVNTDTPL--IRTPSGLSSSVRL 734


>SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20)
          Length = 337

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 164 LRVLGGSTLVLAFIGFMYKKFGSWMFGK--GCHRTQNLTKKPQNELKKSTCQ 313
           +  +G + LVL  + F+  K  SW F +   C    N+T K Q+     T Q
Sbjct: 195 VETIGFAQLVLVLLCFIAIKMSSWKFTRRQECMAAVNMTGKSQSHATSGTKQ 246


>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 251

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 231 VGCLAKVAIGHKILQRNLKTS*RKVP 308
           VGC++K A+G K+   NL+   R +P
Sbjct: 127 VGCVSKFAVGDKVYVLNLRAGPRWLP 152


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 DLCTKSLVVGCLAKVAIGHKILQRNLKTS 293
           +LC ++ + GCLA VA G  I    +KT+
Sbjct: 518 ELCIRAELTGCLATVAGGENITSGCIKTA 546


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 161  WLRVLGGSTLVLAFIG---FMYKKFGSWMF 241
            WL +LG ++L+LAFI    + ++++ SW F
Sbjct: 1019 WLSLLGTASLLLAFITVIVYEFREYKSWDF 1048


>SB_14897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 200 FIGFMYKKFGSWMFGKGCHRTQNLTKKPQNELKKSTC 310
           F+  M +  G   FGKG H  + +  K  +E ++  C
Sbjct: 46  FLEIMVENMGRVNFGKGLHSQRKVVGKRTSEARECVC 82


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 326 SIISTDRYFSLTRFEVSL*DFVSDGNLCQTSNYQTF 219
           +++ T R FSL R E++  DF++ GN+ +  + Q F
Sbjct: 316 TVLRTARLFSLDRLEMNCCDFLA-GNIAEFIDSQDF 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,461
Number of Sequences: 59808
Number of extensions: 220406
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)