Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d07
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ...    30   3.8  
L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.            29   6.7  
D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding prote...    29   6.7  
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ...    29   6.7  
AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.              29   6.7  
AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2 v...    29   6.7  
AJ580919-1|CAE45645.1|  119|Homo sapiens voltage-gated sodium ch...    29   8.8  

>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2781

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 157 QLASSPRRFHFSTSIYRIYVQKVW*LDVWQRLPSDTKSYKETSKRVKEK 303
           Q+ S PR F  + +I    V+ V  L +W+     T+ ++ TS   +EK
Sbjct: 673 QMCSKPREFALALAILECAVKPVVMLPIWREFLGHTRLHRMTSIEREEK 721


>L41840-1|AAC41758.1| 3224|Homo sapiens nucleoporin protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 60   VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 176
            +L  RGD+  +  V       PLP+PG F K PI   +S
Sbjct: 953  ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991


>D42063-1|BAA07662.1| 3224|Homo sapiens RanBP2 (Ran-binding protein 2)
            protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 60   VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 176
            +L  RGD+  +  V       PLP+PG F K PI   +S
Sbjct: 953  ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991


>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2764

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 157 QLASSPRRFHFSTSIYRIYVQKVW*LDVWQRLPSDTKSYKETSKRVKEK 303
           Q+ S PR F  + +I    V+ V  L +W+     T+ ++ TS   +EK
Sbjct: 799 QMCSKPREFALALAILECAVKPVVMLPIWRESLGHTRLHRMTSIEREEK 847


>AC010095-2|AAY14984.1| 3224|Homo sapiens unknown protein.
          Length = 3224

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 60   VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 176
            +L  RGD+  +  V       PLP+PG F K PI   +S
Sbjct: 953  ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 991


>AB209483-1|BAD92720.1| 3138|Homo sapiens RAN binding protein 2
           variant protein.
          Length = 3138

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 60  VLRKRGDEKPSDIVMFHQVRNPLPQPGAFLKIPIGFESS 176
           +L  RGD+  +  V       PLP+PG F K PI   +S
Sbjct: 867 ILSPRGDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHAS 905


>AJ580919-1|CAE45645.1|  119|Homo sapiens voltage-gated sodium
           channel alpha subunit Nav1.7 protein.
          Length = 119

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 158 NWLRVLGGSTLVLAFIGFMYKKFGSWMFGK 247
           N +  LG  TLVLA I F++   G  +FGK
Sbjct: 22  NSVGALGNHTLVLAIIVFIFAVVGMQLFGK 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,761,672
Number of Sequences: 237096
Number of extensions: 1111068
Number of successful extensions: 1813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)