Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d07
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    30   0.81 
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    28   3.3  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    28   3.3  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    26   10.0 
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      26   10.0 

>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 191 LKWNRRGLEANWNL-QESSRLGERVADLVKHYYV*W 87
           +K+ R   E NWNL  +SSR    +  L+KHY+V W
Sbjct: 558 IKFLRYVSEPNWNLLPDSSRTVIDMPVLMKHYFVGW 593


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 FGSWMFGKGCHRTQNLTKKPQNELK 298
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 FGSWMFGKGCHRTQNLTKKPQNELK 298
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 246 LPNIQLPNFLYINP-INASTKVEPP 175
           L N+  P F+YINP I A    EPP
Sbjct: 244 LANMASPEFIYINPLIVARNSEEPP 268


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 71   LPQHNHT*LSPVLINLKLI 15
            L QHNH  +SP+LIN ++I
Sbjct: 2157 LLQHNHHSISPLLINAQVI 2175


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 71   LPQHNHT*LSPVLINLKLI 15
            L QHNH  +SP+LIN ++I
Sbjct: 2185 LLQHNHHSISPLLINAQVI 2203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,319
Number of Sequences: 27780
Number of extensions: 173345
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)