Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10d07
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s... 27 4.1
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s... 27 4.1
At5g15460.2 68418.m01810 expressed protein 27 7.1
At5g15460.1 68418.m01809 expressed protein 27 7.1
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 27 7.1
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 7.1
At4g27610.2 68417.m03968 expressed protein 26 9.4
At4g27610.1 68417.m03967 expressed protein 26 9.4
At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1) ... 26 9.4
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 26 9.4
>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 155 SNWLRVLGGSTLVLAFIGFMYKKFGSW 235
+N+ RVLG S+L+L F + K+F W
Sbjct: 231 NNYSRVLGASSLLLVFSYPLMKRFTFW 257
>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 155 SNWLRVLGGSTLVLAFIGFMYKKFGSW 235
+N+ RVLG S+L+L F + K+F W
Sbjct: 231 NNYSRVLGASSLLLVFSYPLMKRFTFW 257
>At5g15460.2 68418.m01810 expressed protein
Length = 124
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 275 KKPQNELKKSTCQC*LCFSSQ 337
KKP+ +LK++ C C LCF ++
Sbjct: 104 KKPKGDLKQNKCVC-LCFGAR 123
>At5g15460.1 68418.m01809 expressed protein
Length = 124
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 275 KKPQNELKKSTCQC*LCFSSQ 337
KKP+ +LK++ C C LCF ++
Sbjct: 104 KKPKGDLKQNKCVC-LCFGAR 123
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 197 LVLKWNRRGLEANWNLQESSRLGERVADLVK 105
LV+ N++ L NW ++ E + DLVK
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVK 481
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 197 LVLKWNRRGLEANWNLQESSRLGERVADLVK 105
LV+ N++ L NW ++ E + DLVK
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVK 481
>At4g27610.2 68417.m03968 expressed protein
Length = 334
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 149 EDSNWLRVLGGSTLVLAFIGFMYKKFGSWMFGKGCHRTQNLTKKPQNELKKSTCQC 316
E NW+ + GG+ L I F YK S + + L +E +KST C
Sbjct: 20 EGPNWILIAGGALLSTLSIRFGYKLKQSLDSKPQSNGSAGLKPNGTSERQKSTSCC 75
>At4g27610.1 68417.m03967 expressed protein
Length = 334
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 149 EDSNWLRVLGGSTLVLAFIGFMYKKFGSWMFGKGCHRTQNLTKKPQNELKKSTCQC 316
E NW+ + GG+ L I F YK S + + L +E +KST C
Sbjct: 20 EGPNWILIAGGALLSTLSIRFGYKLKQSLDSKPQSNGSAGLKPNGTSERQKSTSCC 75
>At3g23430.1 68416.m02953 phosphate transporter, putative (PHO1)
identical to PHO1 protein [Arabidopsis thaliana]
GI:20069032; supporting cDNA gi|20069031|gb|AF474076.1|;
contains Pfam profiles PF03124: EXS family and PF03105:
SPX domain
Length = 782
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 292 LVLRFLCKILCPMATFAKHPTTKLFV 215
L+L F+C ++CP TF + PT F+
Sbjct: 511 LLLIFICVLICPFNTFYR-PTRFCFI 535
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 210 LCTKSLVVGCLAKVAIGHKILQRNLKTS*RKVPVSADYALVH 335
L TK ++GC A+ +GH + L+T+ P D ++H
Sbjct: 125 LATKMQIIGCYAQTELGHGSNVQGLETTATFDP-KTDQFIIH 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,601,720
Number of Sequences: 28952
Number of extensions: 160568
Number of successful extensions: 333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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