Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d05
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84...    28   6.8  
01_01_0743 - 5763654-5766902                                           28   6.8  
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215...    28   9.0  
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    28   9.0  

>07_01_0113 +
           840866-841574,841687-842210,842391-842840,843541-843699
          Length = 613

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 405 FYIVIPCWVNDFLDLESVRASSN 337
           F+  +P W+ DF DL+ +R S N
Sbjct: 328 FFGSLPAWIGDFRDLQILRLSHN 350


>01_01_0743 - 5763654-5766902
          Length = 1082

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 534 HRILEQAGLDVL*KIGNVCIAKLQDCGH 451
           H  LE+ GL V   +GN  IA    CGH
Sbjct: 219 HGYLEKLGLGVQCAVGNALIALYSRCGH 246


>09_01_0144 -
           2158924-2158962,2159180-2159315,2159393-2159499,
           2159594-2160055,2162755-2162836,2164222-2164346,
           2164555-2164623,2164935-2165056,2165823-2165856
          Length = 391

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 327 CLNGWSWPEPIPDPRNHLP 383
           CLN W W +P P  +  LP
Sbjct: 219 CLNPWGWMKPRPSEQKSLP 237


>04_04_1509 - 34074206-34074398,34074506-34074777,34075411-34075608,
            34076092-34076187,34076318-34076500,34076597-34076799,
            34076887-34077013,34077098-34077292,34077400-34077540,
            34077669-34077812,34077876-34078040,34078776-34078976,
            34079049-34079195,34079275-34079427,34079731-34079833,
            34079954-34080069,34080168-34080349,34080442-34080541,
            34081200-34081527,34081605-34081834,34081979-34082110,
            34082787-34082859,34083274-34083338
          Length = 1248

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/91 (24%), Positives = 34/91 (37%)
 Frame = +1

Query: 415  ELKDSEDHDKIAVAAVLQLSNADITNLLKYIKTRLFENSMLKDDLLKGKSMGVGFALLRP 594
            E K   D      A +L+   A +  L    K          + +   K     F  LRP
Sbjct: 822  EFKADVDRKNQQTAEILKRQGAQLIELENLYKQEQVLRKRYYNTIEDMKGKIRVFCRLRP 881

Query: 595  FNDKQYRVMERIVISSPTKCLTTVKKRKDEK 687
             NDK+    ++ ++ SP +  T     KD+K
Sbjct: 882  LNDKELIEKDKNIVCSPDE-FTVAHPWKDDK 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,091,169
Number of Sequences: 37544
Number of extensions: 376133
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)