Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d05
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16200| Best HMM Match : Zn_clus (HMM E-Value=0.93)                  32   0.56 
SB_54186| Best HMM Match : Herpes_U44 (HMM E-Value=7.9)                31   1.3  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    29   3.0  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   6.9  

>SB_16200| Best HMM Match : Zn_clus (HMM E-Value=0.93)
          Length = 141

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +1

Query: 415 ELKDSEDHDKIAVAAVLQ----LSNADITNLLKYIKTRLFENSMLKDDLLKGKSMGVG 576
           +LK   D +KI +   +     LS+ D+  ++    TR +EN  +KD  +KG+   VG
Sbjct: 43  DLKPPADENKIPMPPCMMYCESLSSGDVIKVVVKDGTRCYENPSIKDVCVKGRCQSVG 100


>SB_54186| Best HMM Match : Herpes_U44 (HMM E-Value=7.9)
          Length = 377

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 313 NNFKCALMVGAGPNRFQIQEIIYPARNNNVKLEVELKDSEDHDKIAVAAVLQLSNADITN 492
           N++  AL  G GP R  ++E+      N +   VEL  + +HDK+   ++   + +D+  
Sbjct: 234 NSYAYALGRGDGPKRVVLEEV---REQNQLHDRVELLGTLEHDKVRDVSIYHRTASDLRR 290

Query: 493 LLKY 504
           +  +
Sbjct: 291 ITNF 294


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 367 QEIIYPARNNNVKLEVELKDSEDHDKI 447
           +E+ +PA    VKLEVE     DH+ +
Sbjct: 428 EEVTHPAHKEGVKLEVETAPMTDHESV 454


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 388 RNNNVKLEVELKDSEDHDKIAVAAVLQLSNA-DITNLLKYIKTRLFENSMLKD 543
           R+ + ++   L  S ++  +A +    LSN  D+  +  Y+KT+  E S +KD
Sbjct: 8   RDTSFRMAYSLPSSNEYQTMANSTKKLLSNYFDVNYVTGYLKTKFMEFSFVKD 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,294,195
Number of Sequences: 59808
Number of extensions: 433118
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)