Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d05
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 528 FDVERRSSKRQIDGSRFRLIETF*R*AISCNGKNCYQQP 644
           FD + R +K  IDG  F L       A+S    N Y  P
Sbjct: 229 FDYDPRYAKMTIDGESFTLKNGICGMALSPVTNNLYYSP 267


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 444 FVVIFRVFQLDF*FYIVIPC 385
           FVVI R   L + F +++PC
Sbjct: 223 FVVIIRRRTLYYFFNLIVPC 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,860
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)