Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d05
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si...    30   1.9  
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /...    29   2.4  
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /...    29   2.4  
At3g19330.1 68416.m02451 polyadenylate-binding protein-related /...    29   2.4  
At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containi...    29   3.2  
At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21...    29   3.2  
At4g27595.1 68417.m03964 protein transport protein-related low s...    28   7.5  
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    28   7.5  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    28   7.5  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    28   7.5  
At3g21590.1 68416.m02723 senescence/dehydration-associated prote...    27   9.9  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    27   9.9  

>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
           similar to beta-galactosidase (lactase) from Alteromonas
           haloplanktis [SP|P81650]; contains Pfam glycoside
           hydrolase domains PF02836, PF02837, PF02929, PF02930
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 306 EPEQFQMCLNGWSWPEPIPDPRNH 377
           +P     CLNG  WP+  P P  H
Sbjct: 644 QPNDLNFCLNGLIWPDRTPHPALH 667


>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 345

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +1

Query: 247 INFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNRFQIQEIIYPARNNNVKLEVELKD 426
           +N  L+ ++R    L+T +   + F   L +  G +   IQEI+   R +++ L  +LKD
Sbjct: 259 LNKDLDTIDRLVSRLHTGI-EYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKD 317

Query: 427 SEDH 438
            EDH
Sbjct: 318 LEDH 321


>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 349

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +1

Query: 247 INFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNRFQIQEIIYPARNNNVKLEVELKD 426
           +N  L+ ++R    L+T +   + F   L +  G +   IQEI+   R +++ L  +LKD
Sbjct: 259 LNKDLDTIDRLVSRLHTGI-EYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKD 317

Query: 427 SEDH 438
            EDH
Sbjct: 318 LEDH 321


>At3g19330.1 68416.m02451 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 382

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +1

Query: 247 INFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNRFQIQEIIYPARNNNVKLEVELKD 426
           +N  L+ ++R    L+T +   + F   L +  G +   IQEI+   R +++ L  +LKD
Sbjct: 291 LNKDLDTIDRLVSRLHTGI-EYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKD 349

Query: 427 SEDH 438
            EDH
Sbjct: 350 LEDH 353


>At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 849

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
 Frame = -1

Query: 674 RFLTVVRHLVGLLIT-----ILSITRYCLSLKGLNKAK 576
           +FL ++ HL+   IT     ILS+ ++C++++G+ K K
Sbjct: 415 QFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVK 452


>At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575
          Length = 270

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 377 MISWIWNRFGPAPTIKAHL--KLFWFPTRVFSHTALRSSASKRKFMNSLISI 228
           ++S I+ R    PT K+ L  K+F           LRSSA++ K + +++SI
Sbjct: 62  LLSLIFGRSRSLPTAKSSLFFKIFLLALLGMEQVMLRSSATQAKIIGTIVSI 113


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
 Frame = +1

Query: 361  QIQEIIYPARNNNVKLEVELKDSEDHDKIAVAAVLQLSNADITNLLK--YIKTRLFENSM 534
            ++QE +    N    + +E++D +  D +A   + +LSN + + L+K   ++  +FEN  
Sbjct: 841  KLQENLLDKENELHDMVLEIEDLKAKDSLAEKKIEELSNLNKSLLVKESELQDVVFENEK 900

Query: 535  LKD-DLLKGKSMGVGFALLRPFNDKQYRVMERIVISSPTKCLTTVKKRKDEKI 690
            LK  + L  K+      + +   DK+  +   +V +   K       +K E++
Sbjct: 901  LKSKEALSLKTTEELSDVKQTLADKEKELKTAVVENEKLKAQAASSFQKIEEL 953


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 359 NRFGPAPTIKAHLKLFWFP 303
           N  GP P    HLK FW+P
Sbjct: 205 NVSGPVPPYSPHLKNFWYP 223


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 359 NRFGPAPTIKAHLKLFWFP 303
           N  GP P    HLK FW+P
Sbjct: 205 NVSGPVPPYSPHLKNFWYP 223


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 359 NRFGPAPTIKAHLKLFWFP 303
           N  GP P    HLK FW+P
Sbjct: 205 NVSGPVPPYSPHLKNFWYP 223


>At3g21590.1 68416.m02723 senescence/dehydration-associated
           protein-related similar to senescence-associated protein
           12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; similar to early-responsive to
           dehydration stress ERD7 protein [Arabidopsis thaliana]
           gi|15320412|dbj|BAB63916
          Length = 241

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 477 CRHYQSFKVHQDPPVREFDVERRSSKRQIDG 569
           C +  S K+H++  + E D ER     QIDG
Sbjct: 109 CSNSYSKKIHEEGTIAEEDEERSGDISQIDG 139


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 520 FENSMLKDDLLKGKSMGVGFALLRPFNDKQY 612
           F N ++KD LLK KS   G ALL P N  ++
Sbjct: 377 FHNGVVKDILLKQKSAS-GLALLYPTNRNKW 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,956
Number of Sequences: 28952
Number of extensions: 309332
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)