Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d04
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    31   1.1  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    29   2.5  
02_05_0813 - 31951168-31951722                                         29   4.3  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   7.5  
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074...    27   9.9  
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300...    27   9.9  

>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 210 VLSETGTNCNIASVSETMSDINQTKLDTLEKKAV 311
           ++ ETG NCNI+   E ++    T L +L  KAV
Sbjct: 240 LMEETGANCNISDNGEPVNKRKATDLKSLGNKAV 273


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 490 LWIWCYNNWIIWKRCQISVISSTYCFTSLCDL 585
           LWIW  + + +W  C +    + YC  S  D+
Sbjct: 226 LWIWPSSRYHVWSNCNLMGKLAQYCVASEMDV 257


>02_05_0813 - 31951168-31951722
          Length = 184

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -1

Query: 556 SMISLIFGNASKLSNCCSTKSKAGT--SVITLSNSSMSLMPLF----IKAGGKGRRQLS 398
           S+ S++ G   + S+CCS+ S+A +  S    S SS      F    + AGG+G  +LS
Sbjct: 52  SLPSVVRGEEEEASSCCSSSSEASSDASSSAASGSSSPWAARFHREMVAAGGRGGGRLS 110


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 493 WI--WCYNNWIIWKRCQISVISSTYCFTSLCDLKN 591
           W+  W YN  II  RCQI+V    Y    + D  N
Sbjct: 582 WVEDWDYNKIIICNRCQIAVHQECYGARDVQDFTN 616


>11_06_0272 +
           21806681-21806908,21806991-21807233,21807318-21807444,
           21807822-21808036
          Length = 270

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 222 TGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYE 401
           +G N  +A+  E +   +    + LE  A    + LE+D      +W L  ++AFS R  
Sbjct: 80  SGLNRGLAASQEDLDRADAAARE-LEAAAGGGPVDLERDVDKLQGRWRLVYSSAFSSRTL 138

Query: 402 SCLRPFPP 425
              RP PP
Sbjct: 139 GGSRPGPP 146


>02_03_0298 -
           17428616-17428738,17428822-17428992,17429913-17430014,
           17431654-17431764,17432142-17432228,17432551-17432588,
           17432830-17432833,17433280-17433419,17434189-17434320,
           17435289-17435354,17435966-17436013,17436055-17436160
          Length = 375

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 LSETGTNCNIASVSETMSDINQTKLDTLEKKAV 311
           + ETG N NI+   E +S    T+L +L  KAV
Sbjct: 232 MEETGANRNISDNGEPVSKRKATELKSLGNKAV 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,241
Number of Sequences: 37544
Number of extensions: 291600
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)