Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d04
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14461| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_18373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_35435| Best HMM Match : ABC_tran (HMM E-Value=6.2)                  28   5.8  
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)             28   5.8  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)                    28   7.7  

>SB_14461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
 Frame = +3

Query: 288 DTLEKKAVHLRLV--LEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMK-SGIKDMD 458
           D++EK+    R++  L  D  A DL+  LFVAA  S+R++S LRP+PP  ++  G K++ 
Sbjct: 3   DSVEKETQLERVIGKLRSDGFACDLRMCLFVAALESYRHDSILRPYPPVGLREDGSKNIQ 62

Query: 459 ELLSVITDVPALDLVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEXI 632
           +L ++ + +P+L   L     LE  P +  ++D   +VL  LK+  +KT+   + + I
Sbjct: 63  KLTNLSSSIPSLS-ALNNDSCLE--PGVWSLLD---WVL--LKKFDVKTLDKSMFQEI 112


>SB_18373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 NIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLK 359
           + A ++  + D+N     TL+K+ +HL+ V E + +  D K
Sbjct: 76  SFAGIASKIMDVNSMNSRTLDKEIMHLKRVQEAEDRKEDRK 116


>SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 NIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLK 359
           + A ++  + D+N     TL+K+ +HL+ V E + +  D K
Sbjct: 262 SFAGIASKIMDVNSMNSRTLDKEIMHLKRVQEAEDRKEDRK 302


>SB_35435| Best HMM Match : ABC_tran (HMM E-Value=6.2)
          Length = 181

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +3

Query: 342 KAADLKWSLFVAAAFSFRYESCL----RPFPPAFMKSGIKDMDELLSVITDVPALDLVLQ 509
           K AD   SL        RY++ L    +PFP  FM+  ++    +   +    A++ +L 
Sbjct: 91  KEADYLLSLAETQESIARYQTSLVFVIKPFPECFMEDNVRLSPRIDEAVAFTAAMEALLH 150

Query: 510 QLDNLEALPNISDIIDLLFYVLVRLKE 590
           +L     L ++ D+ + +  V  ++ E
Sbjct: 151 RLQITYTLIDVLDVQERVNIVKEKIAE 177


>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 448 KTWTNCLV*SLTCQLWIWCYNNWIIWKRCQISVISSTYCFTS 573
           K++ NC V S TC   +  Y N + +K C   VIS   C  S
Sbjct: 3   KSYLNC-VPSKTCTAMVKSYLNCVPFKTCTAMVISYLNCVPS 43


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 491 SWHVSDYTKQFVHVFDATFHKSRRKR 414
           +W + ++ ++F H+F   F K R KR
Sbjct: 577 AWRMEEFRREFKHIFIGCFRKLRCKR 602


>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 491 SWHVSDYTKQFVHVFDATFHKSRRKR 414
           +W + ++ ++F H+F   F K R KR
Sbjct: 390 AWRMEEFRREFKHIFIGCFRKLRCKR 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,407,109
Number of Sequences: 59808
Number of extensions: 346199
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)