Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10d01
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45) 30 2.0
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 29 4.7
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37) 28 6.2
SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3) 28 6.2
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09) 28 6.2
SB_10465| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 6.2
SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11) 28 8.2
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 28 8.2
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22) 28 8.2
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 147 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFD 290
FYY+H+ S L++ + P+FA + + +++ +LP F R D
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKKRLD 150
>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
Length = 1091
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 375 DIRHTIQ*L*SNVTMVATSQHYGFRKKKSADGNSGAEEGGSKKK 506
++R + + L V V + RKKK DG+ +EGG KK+
Sbjct: 721 ELRESYEDLGGKVEFVEKKEGKRRRKKKKEDGDVDEDEGGKKKR 764
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 558 GIMYYSCHCIKRNGLQHDCR 617
G+M+ SC C+ GL H+C+
Sbjct: 763 GLMHVSCQCVLVRGLMHECQ 782
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 447 RKKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 557
+K A G+S + GG K D+ ++ +S++L+G
Sbjct: 45 KKPVKAGGSSSTKTGGGKDDDDEDSDSDNAESKKLKG 81
>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
Length = 292
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 528 LTDFRFHPFFWSHPPP 481
L+D R HPFF +H PP
Sbjct: 1 LSDTRIHPFFATHEPP 16
>SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3)
Length = 462
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 233 GQLSSEMAYKTASFFNKVRFATCAVPALVLNRVHRPVRRVC 355
G+ E+A TA +V +A C P LV +++ V RVC
Sbjct: 268 GKQIPELAVSTAYEVMRVFWAVCRYPVLVRVKMNWSVHRVC 308
>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 278 NKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSH 388
N RFA P + V R+ +AP P+R+TSH
Sbjct: 13 NSPRFANAPHPTPLGTLVTNNSPRLANAPHPSRYTSH 49
>SB_10465| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 352
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 507 DENENQLKRTKSRELRGGIMYYSCHCIKRNGLQHDCRR 620
DE E + ++ + + +G Y +CH NG H RR
Sbjct: 133 DEREREFIKSCAVQYKGAWWYKNCHRANLNGFYHKKRR 170
>SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)
Length = 149
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 447 RKKKSADGNSGAEEGGSKKKDENENQLKRTKS 542
RKKK N AE K+K ++EN K+ S
Sbjct: 108 RKKKEVVNNEEAEPDAKKQKTDDENSNKKNDS 139
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -2
Query: 382 RMSCRAGGIAHTADRAVDTVED*SWHGTGSESNLVEKTGSLVSHFA*KLTEANTGA 215
R+SC + AD+ + E+ + H +E +EK+ ++ +F+ K GA
Sbjct: 637 RLSCEIASLQFDADKFANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGA 692
>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
Length = 628
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 435 HYGFRKKKSADGNSGAEEGGSKKKDENENQLKRTKSR 545
++ + + DG A +GG+KK D+ ++ KS+
Sbjct: 360 YHRLHQSEDGDGKGDARKGGAKKNDKKSDKPSTAKSK 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,999
Number of Sequences: 59808
Number of extensions: 423323
Number of successful extensions: 1820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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