Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10d01
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19490.1 68415.m02278 recA family protein contains Pfam profi...    35   0.044
At1g19010.2 68414.m02366 expressed protein                             30   1.7  
At1g19010.1 68414.m02365 expressed protein                             30   1.7  
At1g65440.1 68414.m07424 glycine-rich protein                          29   2.2  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    29   2.2  
At2g17705.1 68415.m02051 expressed protein                             29   3.8  
At2g16485.1 68415.m01889 expressed protein ; expression supporte...    28   5.1  
At1g56660.1 68414.m06516 expressed protein                             28   5.1  

>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 430

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 447 RKKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGGIMYYSCHCIKRN 596
           +KK  +DGN  +EEG SKK+   +  L +  S   +G IMY       RN
Sbjct: 40  KKKSKSDGNGSSEEGMSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRN 89


>At1g19010.2 68414.m02366 expressed protein
          Length = 290

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +3

Query: 438 YGFRKKKSADGNSGAEEGGSKKKDENENQLKRTK 539
           + +++K + DG++  E GGS  +D++++   R++
Sbjct: 205 FSYKRKHNKDGSNSPEGGGSSSQDDDDDDESRSR 238


>At1g19010.1 68414.m02365 expressed protein
          Length = 319

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +3

Query: 438 YGFRKKKSADGNSGAEEGGSKKKDENENQLKRTK 539
           + +++K + DG++  E GGS  +D++++   R++
Sbjct: 234 FSYKRKHNKDGSNSPEGGGSSSQDDDDDDESRSR 267


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 450  KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGG 560
            KK SADG  G+E GG KK D          SR+  GG
Sbjct: 1608 KKSSADGGWGSESGG-KKSDGEGGWGNEPSSRKSDGG 1643


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
            PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 432  QHYGFRKKKSADGNSGAEEGGSKKKDENENQLKRTKSRELR 554
            QH+  +KKK+ D     E    K K+E  N+ +R + R  R
Sbjct: 1091 QHHTMKKKKATDQKKRKEYEAEKAKNEEINKKRRREERRDR 1131


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 TTIMCTPCGPMVCYKYEDCGPPL 219
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At2g16485.1 68415.m01889 expressed protein ; expression supported
           by MPSS
          Length = 617

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 420 VATSQHYGFRKKKSADGNSGAEEGGSKKKDENENQLKRTKSREL 551
           V T  +YG   +K  DG  GAEE G     E   +  +  S+EL
Sbjct: 383 VDTDVNYGVGIEKEGDGVGGAEEAGQTVDLEEIREENQELSKEL 426


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 447 RKKKSADGNSGAEEGGSKKKDENENQLKRTKSREL 551
           +KK   +G    E    KKKD+ +N+ K TK  ++
Sbjct: 414 KKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKM 448


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,579
Number of Sequences: 28952
Number of extensions: 282533
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)