Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c24
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.1  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -3

Query: 382 KVTRSRPPGHAP----RGAHPSGRIPGTPGSPARTPAKI-TSRNS 263
           K++   PP  A     +G HP  + P    SP+ TP+ + T R S
Sbjct: 46  KLSNKSPPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTS 90


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 344 WGSSFWPYTRDARVSSSY 291
           WG+S WP T D  +S  Y
Sbjct: 479 WGASQWPDTPDL-ISDGY 495


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 379  PWLSTSETRRARTYCCLLTTSSDLRKP 459
            PW +T+ TRR  T     TT+S   +P
Sbjct: 1050 PWWTTTTTRRTTT--TRPTTTSTTTRP 1074


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 325 RIPGTPGSPARTPA 284
           R PGTPG  ++ PA
Sbjct: 90  RSPGTPGPLSQAPA 103


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 325 RIPGTPGSPARTPA 284
           R PGTPG  ++ PA
Sbjct: 246 RSPGTPGPLSQAPA 259


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 642 RWRARGPWSRLSER 601
           RWR  G WS  S +
Sbjct: 180 RWRMEGDWSDCSSQ 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,336
Number of Sequences: 336
Number of extensions: 2458
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)