Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c24
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052...    30   2.0  
10_02_0042 + 4493692-4494019,4494428-4494441                           29   2.6  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   6.0  
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819           28   6.0  
06_03_0178 + 17594062-17595576                                         28   6.0  

>11_05_0015 +
           18403367-18403729,18404500-18404565,18405121-18405234,
           18406109-18406297,18406335-18406667,18406708-18406743,
           18407806-18407919,18408506-18408999,18409293-18409716
          Length = 710

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 370 SRPPGHAPRGAHPS----GRIPGTPGSPARTPA 284
           S PP   PR A PS    G +PG P SP+ +PA
Sbjct: 14  SPPPRKRPRDASPSEEEEGGLPGGPPSPSPSPA 46


>10_02_0042 + 4493692-4494019,4494428-4494441
          Length = 113

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 423 TVSPGPPRLGSAQPRSPGQGHPGTRP 346
           T  P PPR     P SP +GHP   P
Sbjct: 45  TAPPSPPRCRRRAPLSPPRGHPPLAP 70


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 364 PPGHAPRGAHPSGRIPGTPGSPARTP 287
           PPGH P G    G  PG P  P   P
Sbjct: 280 PPGHPPDGMWHRGAAPGGPYRPLGPP 305


>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
          Length = 334

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 358 GHAPRG--AHPSGRIPGTPGSPARTPAKITSR 269
           G+ P+G  A+ SGRIPG P S       IT+R
Sbjct: 70  GYRPQGVPANESGRIPGQPDSSIENFKAITTR 101


>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAKITSRNS 263
           R PGH+PR   PS   P TP   + TP+  ++  S
Sbjct: 3   RSPGHSPRHLSPS-PAPSTPRPSSPTPSSASASAS 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,643
Number of Sequences: 37544
Number of extensions: 260759
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)