Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c24
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 98 7e-21
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 92 4e-19
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 29 4.6
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 4.6
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 29 4.6
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 4.6
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 28 6.1
SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 97.9 bits (233), Expect = 7e-21
Identities = 61/113 (53%), Positives = 75/113 (66%), Gaps = 18/113 (15%)
Frame = +3
Query: 366 LDRVTLAEHFRD----EEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE------- 497
L +T+AE+FRD +G+D+L F+DNIFRFTQAGSEV R S+ ++
Sbjct: 125 LSGLTIAEYFRDGAGEAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEM 184
Query: 498 -GRGGRFT-VKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAEL 650
R T K ++++AVYVPADDLTDPAPATTFAHLDATTVLS IAEL
Sbjct: 185 GAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL 237
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 301 ETRASLVYGQKDEPHGARARVALTG 375
E++A+ V+GQ +EP GARARVAL+G
Sbjct: 103 ESKATFVFGQMNEPPGARARVALSG 127
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 91.9 bits (218), Expect = 4e-19
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +3
Query: 516 TVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 680
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS IAELG+YPAVDPLD
Sbjct: 268 TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLD 322
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 364 PPGHA-PRGAHPSGR-IPGTPGSPART 290
PPG A P G PSGR +PG PG P RT
Sbjct: 478 PPGPAGPPG--PSGRYVPGPPGPPGRT 502
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAKI 278
RPP R H GR P PG P P ++
Sbjct: 387 RPPHEPGRPPHELGRPPHEPGRPPHEPGRL 416
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 373 RSRPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
+ RPP R H GR P PG P P +
Sbjct: 322 QGRPPYEPGRPPHEPGRPPHEPGRPPHEPGR 352
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 359
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 338 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 366
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 345 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 373
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 352 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 380
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 366 RPPHEPGRPPHEPGRPPYEPGRPPHEPGR 394
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 251 PQ*SRVPRSNLRRSTSWRPGR--PW-YTARRMSPTGRVP 358
PQ R+P + R SW P R P+ T RR+SP R P
Sbjct: 208 PQKERIPHQSPERLPSWSPVRQSPFNKTHRRLSPPRRSP 246
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAKI 278
RPP R H GR P PG P P ++
Sbjct: 153 RPPHEPGRPPHELGRPPHEPGRPPHEPGRL 182
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 373 RSRPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
+ RPP R H GR P PG P P +
Sbjct: 88 QGRPPYEPGRPPHEPGRPPHEPGRPPHEPGR 118
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 125
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 104 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 132
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 111 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 139
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 118 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 146
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
RPP R H GR P PG P P +
Sbjct: 132 RPPHEPGRPPHEPGRPPYEPGRPPHEPGR 160
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 370 SRPPGHAPRGAHPSGRIPGTPGSPAR 293
S+P G A RGA P+GR T G+PAR
Sbjct: 330 SKPGGVAARGA-PAGRGAATRGAPAR 354
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 414 PGPPRLGSAQPRSPGQGHPGTRPVGL 337
PG P GS P SPG G PG+ G+
Sbjct: 1356 PGFPSPGSGIPGSPGSGIPGSPGSGI 1381
>SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTPAKITSRNS 263
+PPG P+ H + PG G RTP + N+
Sbjct: 583 QPPGKVPQPPHTTPLAPGMGGERGRTPNADLTHNA 617
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 329 WPYTRDARVSSSYSGEDYFEELLIIAAHI 243
WP+ R R SS +GED +L + H+
Sbjct: 2435 WPHWRRTRRSSGVAGEDNLYDLYAVCNHL 2463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,032
Number of Sequences: 59808
Number of extensions: 290832
Number of successful extensions: 2443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -