Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c24
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 129 2e-30
Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 5.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 5.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 5.4
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 28 7.1
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 9.4
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 27 9.4
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 27 9.4
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 129 bits (312), Expect = 2e-30
Identities = 72/119 (60%), Positives = 86/119 (72%), Gaps = 14/119 (11%)
Frame = +3
Query: 366 LDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE-----GRGGR- 512
L +T+AE+FRD+EGQD+LLFIDNIFRFTQAGSEV R S+ ++ G
Sbjct: 293 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQ 352
Query: 513 ---FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 680
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS IAEL +YPAVDPLD
Sbjct: 353 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLD 411
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 304 TRASLVYGQKDEPHGARARVALTG 375
++ SLVYGQ +EP GARARV LTG
Sbjct: 272 SKVSLVYGQMNEPPGARARVCLTG 295
>Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical
protein C54E10.4 protein.
Length = 345
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -2
Query: 311 ARVSSSYSGEDYFEELLIIAAHIYIF 234
A+++ YSG+ YFE+LL++ HI+ F
Sbjct: 121 AQINQDYSGKMYFEKLLLVLTHIFPF 146
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 382 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 284
+ R P P GA+P G +PG TPG PA+ PA
Sbjct: 256 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 289
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 420 VSPGPPRLGSAQPRS-PGQGHPGTRPVG 340
++PG P A PR+ PG PGT P G
Sbjct: 279 MTPGYPAQAPAAPRTTPGSAGPGTGPPG 306
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 382 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 284
+ R P P GA+P G +PG TPG PA+ PA
Sbjct: 254 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 287
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 420 VSPGPPRLGSAQPRS-PGQGHPGTRPVG 340
++PG P A PR+ PG PGT P G
Sbjct: 277 MTPGYPAQAPAAPRTTPGSAGPGTGPPG 304
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 426 TTVSPGPPRLGSAQPRSPGQGHPGTRPVGLILLAVYQ 316
TT P PP +G + P QG GT+ V L+A+ Q
Sbjct: 417 TTTGPPPPAMGLSVPVQYDQGEYGTQSVRAQLVALDQ 453
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 370 SRPPGHAPRGAHPSGRIPGTPGSPARTP 287
S PPG P+ R PG PG P R P
Sbjct: 241 SDPPGPPGPPGPPTRRPPGPPGPPTRRP 268
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 367 RPPGHAPRGAHPSGRIPGTPGSPARTP 287
RPPG P G P+ R PG PG P R P
Sbjct: 256 RPPG--PPGP-PTRRPPGPPGPPTRRP 279
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 417 SPGPPRLGSAQPRSPGQGHPGT 352
SP PPR GS P P +G P T
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPT 309
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 373 RSRPPGHAPRGAHPSGRIP-GTP--GSP 299
RS P G P G+ P+GR P G+P GSP
Sbjct: 409 RSPPTGSPPTGSPPTGRPPRGSPPTGSP 436
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 417 SPGPPRLGSAQPRSPGQGHPGT 352
SP PPR GS P P +G P T
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPT 330
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 373 RSRPPGHAPRGAHPSGRIP-GTP--GSP 299
RS P G P G+ P+GR P G+P GSP
Sbjct: 430 RSPPTGSPPTGSPPTGRPPRGSPPTGSP 457
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 417 SPGPPRLGSAQPRSPGQGHPGT 352
SP PPR GS P P +G P T
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPT 315
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 373 RSRPPGHAPRGAHPSGRIP-GTP--GSP 299
RS P G P G+ P+GR P G+P GSP
Sbjct: 415 RSPPTGSPPTGSPPTGRPPRGSPPTGSP 442
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 364 PPGHA-PRG-AHPSGRIPGTPGSPARTPA 284
PPG A P G A P G PG PG+P TP+
Sbjct: 170 PPGPAGPAGNAGPPGA-PGGPGAPGNTPS 197
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 294 RAGDPGVPGIRPEG*APRGACPGGL 368
+ G PG PG+ P G P G P G+
Sbjct: 572 QGGQPGHPGMMPPGMMPPGMMPPGM 596
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 364 PPGHAPRGAHPSGRIPGTPGSPARTP 287
PPG P G P G PG G P P
Sbjct: 588 PPGMMPPGMMPPGMHPGMAGMPPMHP 613
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 385 AKVTRSRPPGHAPRGAHPSGRIPGTPGSPARTPAK 281
AK P AP A P +IP P +P + P K
Sbjct: 1018 AKPRDPSPKKAAPVAAKPDPKIPEVPPTPVKNPVK 1052
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 364 PPGHAPRGAHPSGR-IPGTPGSP 299
PPGH G P G+ PG PG P
Sbjct: 192 PPGHGGMGGPPPGQGGPGGPGGP 214
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 364 PPGHAPRGAHPSGR-IPGTPGSP 299
PPGH G P G+ PG PG P
Sbjct: 472 PPGHGGMGGPPPGQGGPGGPGGP 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,155
Number of Sequences: 27780
Number of extensions: 220284
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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