Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c24
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 128 3e-30
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 128 3e-30
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 128 3e-30
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 27 8.7
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 27 8.7
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 128 bits (309), Expect = 3e-30
Identities = 71/120 (59%), Positives = 85/120 (70%), Gaps = 14/120 (11%)
Frame = +3
Query: 363 GLDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFEGRGGR----- 512
GL +T+AE+FRD EGQD+LLFIDNIFRFTQA SEV R S+ ++
Sbjct: 310 GLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGAL 369
Query: 513 ----FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 680
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS I+ELG+YPAVDPLD
Sbjct: 370 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLD 429
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 289 EYELETRASLVYGQKDEPHGARARVALTG 375
E + E++ +LVYGQ +EP GARARV LTG
Sbjct: 285 EKQSESKCALVYGQMNEPPGARARVGLTG 313
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 128 bits (309), Expect = 3e-30
Identities = 71/120 (59%), Positives = 85/120 (70%), Gaps = 14/120 (11%)
Frame = +3
Query: 363 GLDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFEGRGGR----- 512
GL +T+AE+FRD EGQD+LLFIDNIFRFTQA SEV R S+ ++
Sbjct: 313 GLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGAL 372
Query: 513 ----FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 680
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS I+ELG+YPAVDPLD
Sbjct: 373 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLD 432
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 289 EYELETRASLVYGQKDEPHGARARVALTG 375
E + E++ +LVYGQ +EP GARARV LTG
Sbjct: 288 EKQSESKCALVYGQMNEPPGARARVGLTG 316
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 128 bits (309), Expect = 3e-30
Identities = 71/120 (59%), Positives = 85/120 (70%), Gaps = 14/120 (11%)
Frame = +3
Query: 363 GLDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFEGRGGR----- 512
GL +T+AE+FRD EGQD+LLFIDNIFRFTQA SEV R S+ ++
Sbjct: 310 GLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGAL 369
Query: 513 ----FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 680
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS I+ELG+YPAVDPLD
Sbjct: 370 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLD 429
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 289 EYELETRASLVYGQKDEPHGARARVALTG 375
E + E++ +LVYGQ +EP GARARV LTG
Sbjct: 285 EKQSESKCALVYGQMNEPPGARARVGLTG 313
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 495 EGRGGRFTVKLSLRSNLKAVYVPADDLTDPAPATT 599
EG G + VKL R A V L DPAP +
Sbjct: 615 EGSGNKLIVKLPNRGRSPAQSVSGGSLEDPAPVNS 649
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 495 EGRGGRFTVKLSLRSNLKAVYVPADDLTDPAPATT 599
EG G + VKL R A V L DPAP +
Sbjct: 615 EGSGNKLIVKLPNRGRSPAQSVSGGSLEDPAPVNS 649
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,736
Number of Sequences: 28952
Number of extensions: 188305
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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