Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.1  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   2.1  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    25   3.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   4.8  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   6.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   6.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   8.3  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 201 KNLDNDVPYFKTMASTTENVAIYV-WDQLQRIMEKPQLLHEVK 326
           +NLD + P F+       NV +++ +DQ   IM +P LLH++K
Sbjct: 512 ENLDAEDPLFRA------NVHLHMTYDQAIIIMSRPVLLHKMK 548


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 138 VMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIME 299
           V+ I+DL+K+  T  +     +    DVP    +  T EN+ + + D  + + E
Sbjct: 62  VLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLSKGLYE 115


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +3

Query: 153 DLKKYIKTAX----LEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEK 302
           D   YI+TA     ++ L  K  DN+V      A  T + +   +D +QRIM K
Sbjct: 90  DNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 231 KTMASTTENVAIYVWDQLQRIMEKPQLLHEVKILET 338
           +T    T+N   + WD L +IME P LL   +I ET
Sbjct: 707 ETNVLATKNYQKWRWDTLVQIMEGP-LLSPKRIDET 741


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 126 QXGMVMNITDLKKYIKTAXLEPLDHKNLDND 218
           Q G +    DL  +I        +HK LDND
Sbjct: 89  QQGQIETKPDLTLFINELLTTKKEHKKLDND 119


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 248  YRKCRNICLGPTSKNNGKTTI 310
            Y  C + CLGP    NGK  +
Sbjct: 967  YNLCYSTCLGPVKIVNGKVKL 987


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 189  PLDHKNLDNDVPYF 230
            PLDH  L  DVP F
Sbjct: 975  PLDHMRLSEDVPAF 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,308
Number of Sequences: 5004
Number of extensions: 25709
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)