Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0978 + 7738232-7740848,7740929-7741320                           30   0.64 
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   0.85 
06_02_0239 + 13384451-13387124,13387234-13387631                       29   1.1  
12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906     26   7.9  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    26   7.9  
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769...    26   7.9  

>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +3

Query: 72   TYCIIILFLVTVKGPVDPQXGMVMNITDLKKYI-KTAXLEPLDHKNLDNDVPY-FKTMAS 245
            ++ +++L LVT K PVDP+ G      DL K++  T   + ++H  LD+ +   FK   +
Sbjct: 888  SFGVVLLELVTGKPPVDPEFGE----KDLVKWVCSTIDQKGVEHV-LDSKLDMTFKDEIN 942

Query: 246  TTENVAIYVWDQLQRIMEKPQLLHEVKILE 335
               N+A+     L   + +P +   VK+L+
Sbjct: 943  RVLNIALLCSSSLP--INRPAMRRVVKMLQ 970


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 203 LMVEWFQXGCFYVFLEVSYIHHHTXLR 123
           L+V W+Q G FY F    + HH T  R
Sbjct: 632 LLVRWYQVGAFYPFFR-GHAHHDTKRR 657


>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 72  TYCIIILFLVTVKGPVDPQXGMVMNI 149
           +Y +++L ++T K PVDPQ G  MN+
Sbjct: 907 SYGMLLLEMITGKRPVDPQFGGDMNL 932


>12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906
          Length = 218

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 321 PHAVIVVFPLFFEVGPRHILRHF 253
           PH ++V F   +++GP   LRHF
Sbjct: 110 PHLLLVNFFPIYKLGPHQHLRHF 132


>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 72  TYCIIILFLVTVKGPVDPQXGMVMNITDLKKYIKTA 179
           +Y I++L ++T K PVD   G  MN   L+K+++ +
Sbjct: 857 SYGIMLLEMITGKSPVDQMFGGEMN---LEKWVRAS 889


>01_05_0199 -
           19174971-19175105,19176302-19176628,19176813-19176915,
           19178852-19178916,19179941-19180048,19180213-19180305,
           19180395-19180442,19180801-19180899,19180980-19181096,
           19181186-19181239,19181312-19181404,19181776-19181881,
           19182050-19182084,19182173-19182259,19182385-19182462,
           19182528-19182596,19182682-19182780,19183644-19183685,
           19184498-19184570,19184654-19184982,19185070-19185127,
           19185217-19185269,19186075-19186144,19186276-19186337,
           19186452-19186540,19186906-19187011,19187110-19187178,
           19187295-19187330
          Length = 900

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 141 MNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKPQLLHE 320
           +N+T ++   KT+  EP+ + N       FK +  ++   + + WDQ  R++   +    
Sbjct: 341 INVTPVED--KTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGA 398

Query: 321 VKILETEK 344
           +K L   K
Sbjct: 399 LKTLGERK 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,988
Number of Sequences: 37544
Number of extensions: 138963
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)