Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   2e-17
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        84   4e-17
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               27   3.4  
SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)          27   4.6  
SB_22740| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              26   8.0  

>SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 44/88 (50%), Positives = 59/88 (67%)
 Frame = +3

Query: 99  VTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 278
           VTV   VD   GMVMN+  LK  I+   L  LDHKNLD DV YF+T+ ST EN+A+Y+++
Sbjct: 113 VTVASTVDEDTGMVMNLVALKGKIEEV-LSELDHKNLDLDVEYFQTVVSTAENIAVYIYN 171

Query: 279 QLQRIMEKPQLLHEVKILETEKNHVVYR 362
           QL R +    +L+EV++ ET+KN   YR
Sbjct: 172 QLNRGL-PDGILYEVRVHETDKNVAFYR 198


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 45/88 (51%), Positives = 59/88 (67%)
 Frame = +3

Query: 99   VTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 278
            VTV   VD   GMV+N+  LK  I+   L  LDHKNLD DV YFKT+ ST ENVAIY++D
Sbjct: 935  VTVASTVDGTTGMVINLVTLKGKIEEV-LGKLDHKNLDMDVAYFKTVVSTAENVAIYIYD 993

Query: 279  QLQRIMEKPQLLHEVKILETEKNHVVYR 362
            QL+ ++     L+EV ++E+E +  VYR
Sbjct: 994  QLKPLLPDGS-LYEVGLIESETDAAVYR 1020


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +3

Query: 78   CIIILFLVTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDV--PYFKTMASTT 251
            C   L  + +   V+ +   ++N+ DLK+      L     K L N V   Y K + S +
Sbjct: 781  CTSTLVRLIIGEGVEFEGDPLINMRDLKEV--EGKLPKDKTKWLSNFVIDSYLKIVKSES 838

Query: 252  ENVAIYVWDQLQRIMEKPQL--LHEVKILETEKNHVVY 359
             NV ++ W++ +R +E  +L  L + K    EKN V++
Sbjct: 839  TNVEVFGWEEFERGVENKKLEELLKGKGNLLEKNMVLF 876


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 186  EPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKPQLLHEV 323
            EPL H NL N  PY +   +  E        Q  R + +P+++  V
Sbjct: 1783 EPLQHSNLVNSTPYIRPSQTHNEKSHWGTGPQRARPVVRPRVVGHV 1828


>SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)
          Length = 313

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +3

Query: 78  CIIILFLVTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDV--PYFKTMASTT 251
           C   L  + +   V+ +   ++N  DLK+       + +  K L N V   Y K + S +
Sbjct: 83  CTSTLVRLIIGEGVEFEGDPLINTRDLKEVEGKLPKDKM--KWLSNFVIDSYLKIVKSES 140

Query: 252 ENVAIYVWDQLQRIMEKPQLLHEVKILET--EKNHVVY 359
            NV ++ W++ +R +E  +L   +K      EKN V++
Sbjct: 141 TNVEVFGWEEFERGVENKKLEEFLKGKGNLLEKNMVLF 178


>SB_22740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 77  LYNY--FISCNSKGSCRSSXWYGDE 145
           LYNY  F S N   SC++S WY D+
Sbjct: 288 LYNYPFFWSGNFTFSCKNSFWYCDD 312


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 138 VMNITDLKKYIKTAXLEPLDHKNLDNDV--PYFKTMASTTENVAIYVWDQLQRIMEKPQL 311
           ++N+ DLK+       + +  K L N V   Y K + S + NV ++ W++ +R +E  +L
Sbjct: 386 LINMRDLKEMEGKLPKDKM--KWLSNFVIDSYLKIVKSESTNVEVFGWEEFERGVENKKL 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,856,604
Number of Sequences: 59808
Number of extensions: 184163
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)