Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    88   2e-18
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    88   2e-18
Z82256-6|CAB05117.2|  616|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z78417-6|CAC42263.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    26   9.3  

>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 41/88 (46%), Positives = 61/88 (69%)
 Frame = +3

Query: 99  VTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 278
           V ++G VDP  GMV ++  LKK +    L+ +DH+NLD DV +FKT  ST+ENVAIY+++
Sbjct: 49  VKLRGEVDPTSGMVYDLAKLKKEMSLV-LDTVDHRNLDKDVEFFKTTVSTSENVAIYMFE 107

Query: 279 QLQRIMEKPQLLHEVKILETEKNHVVYR 362
           +L+ +M  P +L++V I ET KN   Y+
Sbjct: 108 KLKSVMSNPSVLYKVTIEETPKNIFTYK 135


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 41/88 (46%), Positives = 61/88 (69%)
 Frame = +3

Query: 99  VTVKGPVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 278
           V ++G VDP  GMV ++  LKK +    L+ +DH+NLD DV +FKT  ST+ENVAIY+++
Sbjct: 52  VKLRGEVDPTSGMVYDLAKLKKEMSLV-LDTVDHRNLDKDVEFFKTTVSTSENVAIYMFE 110

Query: 279 QLQRIMEKPQLLHEVKILETEKNHVVYR 362
           +L+ +M  P +L++V I ET KN   Y+
Sbjct: 111 KLKSVMSNPSVLYKVTIEETPKNIFTYK 138


>Z82256-6|CAB05117.2|  616|Caenorhabditis elegans Hypothetical
           protein B0513.5 protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 168 IKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIM 296
           IKT  LEPL     + +   F+ M   T +VA Y  ++  RIM
Sbjct: 347 IKTGSLEPLIQNLSNEEEQEFRNMVRRTLDVAEYAIEKGVRIM 389


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
            protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 114  PVDPQXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTT 251
            PVD     +++     K  KT  + P+D K + ++ P     A T+
Sbjct: 892  PVDDLLSEILSGAKTTKTTKTTKMPPVDQKKISSEAPPISDSAPTS 937


>Z78417-6|CAC42263.1|  336|Caenorhabditis elegans Hypothetical
           protein C35C5.8a protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 59  RNKKNVLYNYFISCNSKGSCRSSXWYGDEYN 151
           R + NV  +YF+ CN+ G  R+   + + YN
Sbjct: 65  RERINVYEDYFMECNTLGHERAERVFQNVYN 95


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 168 IKTAXLEPLDHKNLDNDVPYFK 233
           +KT    P++ K LDN  P+FK
Sbjct: 492 VKTPLEAPIEDKKLDNKKPFFK 513


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 156 LKKYIKTAXLEPLDHKNLDNDVPYFKTMAST-TENVAIY 269
           L +Y++        ++ L+ND+  F+  A T +E +A+Y
Sbjct: 66  LARYVEKVRFLEAQNRVLENDIGVFRNAAHTHSERIAVY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,543,183
Number of Sequences: 27780
Number of extensions: 145759
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)