Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   7.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   7.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 280 WSQTYIATFSVVLAIVLKYGTSLSKFLWSS 191
           W Q +     +  +I+L  GT+L + +W +
Sbjct: 267 WGQGHAILKGLKTSIILMNGTTLPQIMWGT 296


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 306 VVFPLFFEVGPRHIL 262
           V+FP  +E+ P+H L
Sbjct: 153 VIFPPVYEILPQHHL 167


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 185 QXGCFYVFLEVSYIHHHTXLRIYRTLYC 102
           + G  Y+    +Y H  T L++ R L+C
Sbjct: 26  EFGFSYLLNCKNYDHPTTLLKLKRYLFC 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,955
Number of Sequences: 438
Number of extensions: 2117
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)