Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c23
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08270.1 68418.m00974 expressed protein                             27   3.7  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    27   3.7  
At1g56080.1 68414.m06439 expressed protein                             26   6.5  
At5g11050.1 68418.m01291 myb family transcription factor contain...    26   8.6  

>At5g08270.1 68418.m00974 expressed protein
          Length = 386

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 222 PYFKTMASTTENVAIYVWDQLQRIME 299
           P  +T A+TTEN +  VW  L R +E
Sbjct: 240 PEIRTEATTTENSSDKVWKMLSRPLE 265


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 223 HTSKLWQVLQKMSQYMSGTNFKE*WKNH 306
           H +K W  + KM Q   G   +E W NH
Sbjct: 207 HGTKKWSQIAKMLQGRVGKQCRERWHNH 234


>At1g56080.1 68414.m06439 expressed protein
          Length = 310

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 126 QXGMVMNITDLKKYIKTAXLEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKP 305
           Q G   N++D  + +     +P D  +L   +     +AS   N+   V    Q+++EK 
Sbjct: 3   QSGGDFNLSD--EILAVIPTDPYDQLDLARKITSM-AIASRVSNLESQVSGLRQKLLEKD 59

Query: 306 QLLHEVK 326
           +L+HE++
Sbjct: 60  RLVHELE 66


>At5g11050.1 68418.m01291 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA binding domain;
           identical to cDNA putative transcription factor MYB64
           (MYB64) GI:15375309
          Length = 423

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 211 IMMFHTSKLWQVLQKMSQYMSGTNFKE*WKNH 306
           ++M H  + W V+ +  +  +G   +E W NH
Sbjct: 119 LVMQHGERKWAVISEKLEGRAGKQCRERWHNH 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,881,307
Number of Sequences: 28952
Number of extensions: 125688
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)