Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c22
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    30   0.39 
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    28   1.2  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    28   1.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.8  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   6.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   8.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.5  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 503 VQQFDIDAPEASTDAVQEHGETAECNETGHHKSRVQVELLV 381
           ++QF+ D      + V   GET +  E+ HHKSR+ +EL+V
Sbjct: 715 LKQFERDHIPLKDELVTITGETTDLQESMHHKSRM-LELVV 754


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 486 YVKLLHAIFHALAFPCIVIGFLAVLDYHNKK 578
           ++KL    F+  AF C ++ FL  L Y N K
Sbjct: 439 FIKLNIRTFYLTAFLCALLNFLRYLKYRNSK 469


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 157 QYKH*SKNNTKLTQYKNTKFEKLKFEIKNLAASCHM 50
           ++ H + NN  L   KNT +E+ + ++K+ A   HM
Sbjct: 29  RFAHHTSNNDDLEVKKNTVYERYERKLKSKAEELHM 64


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 727  GTKEARNPAVPLLQINSRRKLKKPTAYCN-PNSPMATKPIQLWSE*KLLMP 578
            G  EAR+    L Q+  R KL    +  + PNSP A+K + L SE K L+P
Sbjct: 979  GVLEARSKR--LSQLEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVP 1027


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 477 RRIYVKLLHAIFHALAFPC--IVIGFLAVLDYHNKKGINNFYSLHSWIGFVAMGLFGLQY 650
           RR ++  ++ +   L F     + G LA    H+K  + N Y++ SW+  + M  F +  
Sbjct: 218 RRTFLATMNILAQTLGFMAGPFLGGILAKATIHSKNAVWNQYTVASWV-MLFMWFFYMLT 276

Query: 651 AVGFF 665
            + FF
Sbjct: 277 IIFFF 281


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 30   NLARNMLM*QLAAKFLISNFNFSNFVFLYCVSFVLFFD 143
            NL+ N L  +L A  L+ NF+ +NF     + F  F +
Sbjct: 1216 NLSTNNLSVRLKAFELLGNFHLNNFTMTALMEFKTFLE 1253


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 469 RQMRYKSTEKPQNVTKPATIRVGCKLNCLSGVSSAQA*PPR**NTQKMVRAETPMSST 296
           ++ + ++ + P++V+K        K       SS+        NT+K V+ ETP++ST
Sbjct: 195 KEAKRENAKVPKDVSKKEAKTTKSKEKATKKTSSSVPKQSTGENTKKAVKLETPLTST 252


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 456 YRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNKKGINNFYSL 602
           Y I R +    ++L  A  H + FP  V  +L +L   + +    FY L
Sbjct: 61  YTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYEL 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 133 NTKLTQYKNTKFEKLKFEIKNLAASC 56
           NT++  Y+N+   +LK E   L  SC
Sbjct: 61  NTEVNLYRNSSVNELKIEALTLIQSC 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,118
Number of Sequences: 5004
Number of extensions: 57690
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)