Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c22
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21677| Best HMM Match : Cytochrom_B561 (HMM E-Value=0)             107   7e-24
SB_26859| Best HMM Match : Pedibin (HMM E-Value=8.2)                   30   2.2  
SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   29   3.9  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   29   3.9  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)             28   6.8  
SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)           28   9.0  
SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   9.0  

>SB_21677| Best HMM Match : Cytochrom_B561 (HMM E-Value=0)
          Length = 246

 Score =  107 bits (258), Expect = 7e-24
 Identities = 56/131 (42%), Positives = 73/131 (55%)
 Frame = +3

Query: 282 ITLATVLLIGVSALTIFWVFYYRGGYAWADDTPDKQFNLHPTLMVAGFVTFCGFSVLLYR 461
           ++L  VL I    LT  W+  YRGG+AW  D   +QFN HP  MV G V     ++++YR
Sbjct: 19  VSLIQVLGIIAIVLTGIWMGKYRGGFAW--DGSGQQFNYHPVCMVIGLVYLYSEAMIVYR 76

Query: 462 ICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNKKGINNFYSLHSWIGFVAMGLFG 641
           + R   +  VKL+H     +AF   V G  A  D+HNK+G  N YSLHSW+G   + LF 
Sbjct: 77  VFRNETKYTVKLVHFALQLVAFFVAVFGLKAAFDFHNKQGFPNMYSLHSWLGLCTVLLFT 136

Query: 642 LQYAVGFFSFL 674
            Q   GF SFL
Sbjct: 137 FQLVGGFVSFL 147


>SB_26859| Best HMM Match : Pedibin (HMM E-Value=8.2)
          Length = 167

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 551 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGETAECNETG 417
           Q   +D RE        ++ D+++ E  +  VQE  ++A+C +TG
Sbjct: 100 QHGTDDERENETARKTAKRVDVNSAEEVSATVQELQDSADCEDTG 144


>SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = -3

Query: 641 SKQSHGDEANPAVERIXXXXXXXXXXXXDSQEADNDARER*RVEDGVQQFDIDAPEASTD 462
           +K SHG E+NP  E                +     +R+  +   G++Q  I A E S  
Sbjct: 26  NKASHGKESNPTAEYNELTAEHNEHGRTQLRPGPQGSRQI-KKSHGIKQ-KITA-EQSRL 82

Query: 461 AVQEHGETAECNE-TGHHKSRVQ 396
             +E   TAE NE T  H  R+Q
Sbjct: 83  TAKESNSTAEYNELTAEHNDRIQ 105


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 515 VEDGVQQFDIDAPEASTDAVQEHGETAECNETGHHKSRVQVELLVRG 375
           V+DG  +F      A+T  + +HG      E GHH+S+    L + G
Sbjct: 143 VDDGTTEFK----GATTKLLTDHGVEVRRAEPGHHRSQASPSLSIAG 185


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 473  ASTDAVQEHGETAECNETGHHKSRVQVELLVRGVVGPGIAPAVIE 339
            A+T  + +HG      E GHH+S+   E   R +    I+ AV+E
Sbjct: 1220 ATTKLLTDHGVVVRRAEPGHHRSQAFAESFHRWLAQRHISCAVLE 1264


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = -3

Query: 641 SKQSHGDEANPAVERIXXXXXXXXXXXXDSQEADNDARER*RVEDGVQQFDIDAPEASTD 462
           +K SHG E+NP  E                +     +R+  +   G++Q  I A E S  
Sbjct: 644 NKASHGKESNPTAEYNELTAEHNEHGRTQLRPGPQGSRQI-KKSHGIKQ-KITA-EQSRL 700

Query: 461 AVQEHGETAECNE-TGHHKSRVQ 396
             +E   TAE NE T  H  R+Q
Sbjct: 701 TAKESNSTAEYNELTAEHNDRIQ 723


>SB_33974| Best HMM Match : Coprogen_oxidas (HMM E-Value=0)
          Length = 539

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 404 DSYGGRFRYILRFLRALVPHLSMLPAHL 487
           D +GGR R++L+ +R  +  +++ PAH+
Sbjct: 158 DVWGGRKRFLLQKIRRAITPVAVAPAHM 185


>SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)
          Length = 497

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 542 DNDARE--R*RVEDGVQQFDIDAPEASTDAVQEHGETAECNETGHHKSRVQVELLVRG 375
           D D RE  R ++E GV Q   D  + +   +   GE A C      K  V  +L+VRG
Sbjct: 71  DPDMRETQRMQLEKGVSQLLSDVSKKTDPILVSLGEMASCIGETDLKCHVYDDLIVRG 128


>SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 339 FYYRGGYAWADDTPDK 386
           FY+R GY W    PDK
Sbjct: 98  FYFRNGYGWNSQGPDK 113


>SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 549

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 542 DNDARE--R*RVEDGVQQFDIDAPEASTDAVQEHGETAECNETGHHKSRVQVELLVRG 375
           D D RE  R ++E GV Q   D  + +   +   GE A C      K  V  +L+VRG
Sbjct: 101 DPDMRETQRMQLEKGVSQLLSDVSKKTDPILVSLGEMASCIGETDLKCHVYDDLIVRG 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,559
Number of Sequences: 59808
Number of extensions: 461272
Number of successful extensions: 1545
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)