Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c21
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033) 30 1.9
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 29 4.4
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.4
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 29 4.4
SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34) 28 5.8
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77) 28 5.8
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33) 28 5.8
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 448 LILYFLAKLKCLQSSCVIGKVIRGRLYGSKYNA 350
LIL +L+ L CVI V+RG L G YNA
Sbjct: 528 LILQPACRLQDLDIQCVIEDVLRGNLRGINYNA 560
>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
Length = 551
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 234 ASSEARTKPRPASAGPTTQNDFQLLDEEYIRK 329
AS + RT+ R GP+ LLDE+YIR+
Sbjct: 4 ASGKYRTRHRCVFHGPSMSGPVHLLDEDYIRQ 35
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 462 DGYLDPGESISAPSVFPYMKTKAEKQSEADDDE 560
DGYL P S+S S ++ AE SE D+D+
Sbjct: 1674 DGYLSPTISVSTSSRKILQRSDAENTSEDDNDD 1706
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 153 TSCCTCEGHHSGAKSSLPLVC 215
T C C G+++GA S+PL C
Sbjct: 4307 TFLCVCVGNYTGALCSIPLAC 4327
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 474 DPGESISAPSVFPYMKTKAEKQSEADDDEE 563
+P E+I S+ PY++ AEKQS+ +E+
Sbjct: 270 NPVENIVKVSLLPYIENTAEKQSKDSSEED 299
>SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)
Length = 264
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 232 EHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRCI 360
EH + G S L + PQL+ TR S C RG+C+
Sbjct: 202 EHRFEIGSSVNLSSIIPQLRDRICAVTRPCSKNNNKCLRGKCV 244
>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
Length = 549
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 208 WSAWFLAMEHLRKPGQSPGLHQLGPQLKMISSCSTR-STSGKTLSCHRGRCI 360
W + R +SP LH PQ +M SSC+TR S S +L R +C+
Sbjct: 14 WLQLISTLNFWRFSDRSP-LHTASPQHQMASSCTTRISYSASSLKTMR-KCL 63
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 232 EHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRCI 360
EH + G S L + PQL+ TR S C RG+C+
Sbjct: 2445 EHRFEIGSSVNLSSIIPQLRDRICAVTRPCSKNNNKCLRGKCV 2487
>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
Length = 390
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 133 ESPKNTLKVFKLFCLCFYHFFVCFNLFKFC 44
++ K V +F LC++ FFV F F++C
Sbjct: 286 KATKTLAVVVGVFILCWFPFFVIFVTFQYC 315
>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 159 CCTCEG-HHSGAKSSLPLVCLVPRDGASSEARTKP 260
C C G HH+ K + P C V DG ++ A +P
Sbjct: 663 CRQCLGLHHNSRKKTEPANCTVSGDGLTTGAANQP 697
>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1347
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 219 VPRDGASSEARTKPRPASAGPTTQNDFQLL----DEEYIRKNFKLPQRALYLDPYRR 377
VPR +P+P GP +D + ++E +R N LP+ LDP RR
Sbjct: 385 VPRRKCCKAGVVEPKPVVRGPDIGDDGAVWWISHEQEALRGNVLLPEVMEMLDPDRR 441
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,880,898
Number of Sequences: 59808
Number of extensions: 453292
Number of successful extensions: 1350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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