Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c21
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44830.1 68415.m05582 protein kinase, putative similar to pro... 31 0.67
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 30 1.2
At1g72550.2 68414.m08390 tRNA synthetase beta subunit family pro... 29 2.7
At1g72550.1 68414.m08389 tRNA synthetase beta subunit family pro... 29 2.7
At4g37550.1 68417.m05314 formamidase, putative / formamide amido... 29 3.6
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 28 6.3
At4g30200.3 68417.m04295 expressed protein contains weak similar... 27 8.3
At4g30200.2 68417.m04294 expressed protein contains weak similar... 27 8.3
At4g30200.1 68417.m04293 expressed protein contains weak similar... 27 8.3
>At2g44830.1 68415.m05582 protein kinase, putative similar to
protein kinase PVPK-1 [Phaseolus vulgaris]
SWISS-PROT:P15792
Length = 765
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 549 QLRFAFLPSFSYMGKRSAQILILRDPSNR 463
QL+F P+ SY G+ Q L+++DP NR
Sbjct: 653 QLKFPESPATSYAGRDLIQALLVKDPKNR 681
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 141 FCKMTSCCTCEGHHSGAKSSLPLVC 215
FCK SCC C SL LVC
Sbjct: 64 FCKRCSCCVCHNFDENKDPSLWLVC 88
>At1g72550.2 68414.m08390 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 584
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 543 EADDDEEIIYILQLP 587
EADDDEEIIY +++P
Sbjct: 54 EADDDEEIIYKIEIP 68
>At1g72550.1 68414.m08389 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 598
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 543 EADDDEEIIYILQLP 587
EADDDEEIIY +++P
Sbjct: 54 EADDDEEIIYKIEIP 68
>At4g37550.1 68417.m05314 formamidase, putative / formamide
amidohydrolase, putative similar to SP|Q50228
Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
{Methylophilus methylotrophus}; contains Pfam profile
PF03069: Acetamidase/Formamidase family
Length = 452
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +3
Query: 150 MTSCCTCEGHHSGAKSSLPLVC--LVPRDGASSEARTKPRPASAGPTTQNDFQLLDEEY 320
+ SCC CEG SG S V +P + R K R GP +L Y
Sbjct: 380 LLSCCPCEGRLSGIVDSPNAVATLAIPTAIFDQDIRPKNRKVPVGPRVVRKPDVLKSTY 438
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 RPASAGPTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRR-PLITFPMTQEDCKHFNL 428
R A T NDF LLD ++ F + + YL Y ++ P ED +HF++
Sbjct: 181 RKFDAKLTKDNDFHLLDGNTVKVPFMMSYKDQYLRGYDGFQVLRLPYV-EDKRHFSM 236
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 141 FCKMTSCCTCEGHHSGAKSSLPLVC 215
FC+ SCC C + SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 141 FCKMTSCCTCEGHHSGAKSSLPLVC 215
FC+ SCC C + SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 141 FCKMTSCCTCEGHHSGAKSSLPLVC 215
FC+ SCC C + SL L C
Sbjct: 144 FCRRCSCCICRKYDDNKDPSLWLTC 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,900
Number of Sequences: 28952
Number of extensions: 311560
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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