Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c20
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24) 31 0.82
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.82
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_1766| Best HMM Match : Nodulin_late (HMM E-Value=7.2) 31 0.82
SB_56283| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_52705| Best HMM Match : RnaseA (HMM E-Value=1.4) 31 0.82
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_49391| Best HMM Match : Gal_Lectin (HMM E-Value=2.6e-05) 31 0.82
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_21337| Best HMM Match : RnaseA (HMM E-Value=1.1) 31 0.82
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_55814| Best HMM Match : zf-AD (HMM E-Value=1.9) 29 3.3
SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_7092| Best HMM Match : zf-AD (HMM E-Value=1.9) 29 3.3
SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9) 29 3.3
SB_57893| Best HMM Match : zf-AD (HMM E-Value=1.9) 29 3.3
SB_5345| Best HMM Match : zf-AD (HMM E-Value=1.9) 29 3.3
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 27 7.6
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 27 7.6
SB_43411| Best HMM Match : zf-CW (HMM E-Value=1.3e-17) 27 7.6
>SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)
Length = 505
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 424 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 458
>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1214
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 637 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 671
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 1733 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 1767
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 727 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 761
>SB_1766| Best HMM Match : Nodulin_late (HMM E-Value=7.2)
Length = 265
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 221 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 255
>SB_56283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 141 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 175
>SB_52705| Best HMM Match : RnaseA (HMM E-Value=1.4)
Length = 346
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 221 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 255
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 28 QRKNSNEINKL---RTYRTFKDKYELENYLVAIPNVKH 62
>SB_49391| Best HMM Match : Gal_Lectin (HMM E-Value=2.6e-05)
Length = 390
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 141 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 175
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 773 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 807
>SB_21337| Best HMM Match : RnaseA (HMM E-Value=1.1)
Length = 344
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 117 QRHTSKFCNKIFVSHFYVTFNESAQTENFIILIPNVVH 4
QR S NK+ Y TF + + EN+++ IPNV H
Sbjct: 221 QRKNSNEMNKL---RTYRTFKDKYELENYLVAIPNVKH 255
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect(2) = 1.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 283 YCTQCTSGNQKNDSKSNYVPVIMMPIYPADQCP 381
YC+ C GN + + P I++ Y +CP
Sbjct: 821 YCSTCEGGNGLRNCSACVAPFILLDSYCVRECP 853
Score = 20.6 bits (41), Expect(2) = 1.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +1
Query: 256 SKAVAAAHSYCTQCTSG 306
++ A H CT+C G
Sbjct: 774 AECTGAGHDRCTKCNHG 790
>SB_55814| Best HMM Match : zf-AD (HMM E-Value=1.9)
Length = 266
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 YVTFNESAQTENFIILIPNVVH 4
Y TF + + EN+++ IPNV H
Sbjct: 154 YRTFKDKYELENYLVAIPNVKH 175
>SB_49408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 316 NDSKSNYVPVIMMPIYPADQCPFDMDCEI 402
ND Y V+ +P+YP CP++ +C +
Sbjct: 27 NDLHKIYPDVLHIPMYPGKFCPYNDNCRM 55
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 286 CTQCTSGNQKNDSKSNYVPVIMMPIYPADQCPFDMDC 396
C C G + + +S P + P+ D C F+ DC
Sbjct: 619 CDNCQLGYKGRNCESCLTPFVGNPLVIGDYCKFEEDC 655
>SB_7092| Best HMM Match : zf-AD (HMM E-Value=1.9)
Length = 119
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 YVTFNESAQTENFIILIPNVVH 4
Y TF + + EN+++ IPNV H
Sbjct: 7 YRTFKDKYELENYLVAIPNVKH 28
>SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9)
Length = 191
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 YVTFNESAQTENFIILIPNVVH 4
Y TF + + EN+++ IPNV H
Sbjct: 7 YRTFKDKYELENYLVAIPNVKH 28
>SB_57893| Best HMM Match : zf-AD (HMM E-Value=1.9)
Length = 135
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 YVTFNESAQTENFIILIPNVVH 4
Y TF + + EN+++ IPNV H
Sbjct: 23 YRTFKDKYELENYLVAIPNVKH 44
>SB_5345| Best HMM Match : zf-AD (HMM E-Value=1.9)
Length = 119
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 69 YVTFNESAQTENFIILIPNVVH 4
Y TF + + EN+++ IPNV H
Sbjct: 7 YRTFKDKYELENYLVAIPNVKH 28
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 NPDGKWNSCK-PENLDEERLKAVVQYLVKSK 261
+P +WNSC PE L++E+ + V Y+ K K
Sbjct: 111 HPLPEWNSCDIPEVLEDEQEEIVKPYVKKQK 141
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 214 DEERLKAVVQYLVKSKAVAAAHSYCTQCT--SGNQKNDSKSN 333
D+E + +++ S+ V + +YC CT GN D SN
Sbjct: 742 DKETVARAAKFVKLSREVPTSGAYCAHCTCSDGNSTADYPSN 783
>SB_43411| Best HMM Match : zf-CW (HMM E-Value=1.3e-17)
Length = 137
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 NPDGKWNSCK-PENLDEERLKAVVQYLVKSK 261
+P +WNSC PE L++E+ + V Y+ K K
Sbjct: 92 HPLPEWNSCDIPEVLEDEQEEIVQPYVKKQK 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,326,509
Number of Sequences: 59808
Number of extensions: 215560
Number of successful extensions: 686
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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