Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c20
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 34  IFCLCRFIERNIKMTDKNL-IAKLASVPLEK-PGFDALNMTAPFMVQMNPDGKW 189
           +  +CR I  NI  TDKN+ I+K+    + K P  D  ++  P + Q  PD  +
Sbjct: 17  VVSICREISSNIISTDKNVPISKMIIHKIFKNPHIDLCSILPPLIQQHYPDSPY 70


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 165 YHKRSGHIESVEAGLLQRHTSKFCNKIF 82
           YH+  G++++ E  L   H  +FC KI+
Sbjct: 274 YHQIIGYLKNEEDQLTAEHYGQFCRKIY 301


>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 40  CLCRFIERNI---KMTDKNLIAKLASVPLE 120
           CLCR ++  +     TDK LI KLA +P +
Sbjct: 107 CLCRPVKSQMGPKAYTDKTLILKLAQIPYD 136


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
            protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 205  ENLDEERLKAVVQYLVKSKAVAAAHSYCTQCTSGNQK 315
            E   EE   A+VQ   +S+A +    YCT C S +Q+
Sbjct: 1059 EQNPEELALALVQLGRESRARSQIIQYCTSCQSSSQR 1095


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,017
Number of Sequences: 27780
Number of extensions: 172724
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)