Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c20
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  LTKILLQNLLVCLWRSPAST 136
           LT +L+   L+ LW  P+ST
Sbjct: 253 LTIVLMTMTLMTLWLEPSST 272


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 293 NALPGIRKMIRN 328
           N +PG+R+++RN
Sbjct: 73  NDVPGVRRVLRN 84


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 293 NALPGIRKMIRN 328
           N +PG+R+++RN
Sbjct: 73  NDVPGVRRVLRN 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,603
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)