Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.11 
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.75 
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   1.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   4.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.3  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 250 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 161
           +L P C    R +FW C F + R  + AQY
Sbjct: 63  VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 250 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 146
           +L P C    R +FW C F   R  +  QY  + N
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 536 STELKNALRSIEWDLEDLEDTISIVEKNSSKFKID 640
           +TEL  A+  +   L+DL+  + I  KNS  F +D
Sbjct: 38  NTELTYAIDELSETLKDLKAAVEIAMKNSEHFGLD 72


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 232 LPSFRVQFWFCHFFYSRTCIAAQYI 158
           + S  +  WFC FF+   CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 494  KTPIIASSPEVEWTSTELKNALRSIEWDLED 586
            +TP++A+     W  T          WD ED
Sbjct: 924  QTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 464 GLYLRWQEICKTPIIASSP---EVEWTSTE 544
           GLYL W+   KT +++SS    E +W S E
Sbjct: 471 GLYLIWKIYKKTKLVSSSEADLETDWKSLE 500


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 458  TRGLYLRWQEICKTP--IIASSPEVEWTSTELKNALRSIE 571
            TRGL   W EI KTP  ++ ++ E+  +S ++ +++ + E
Sbjct: 1223 TRGLEKLWNEIEKTPDKLLLTTGEIYPSSHKIGSSVETFE 1262


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 563  SIEWDLEDLEDTISIVEKNSSKF 631
            S+  D  DL+DT  ++EKN+S F
Sbjct: 1186 SLNADNLDLKDTNGVLEKNASDF 1208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,242
Number of Sequences: 5004
Number of extensions: 44980
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)