Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867...    30   1.4  
02_03_0335 + 17882461-17882527,17882616-17884723                       30   1.4  
08_01_0894 - 8797302-8797355,8798393-8799082,8799201-8799315,879...    26   3.9  
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    29   4.1  
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858...    28   5.5  
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548...    28   7.2  

>03_02_0463 -
           8673313-8673639,8674040-8674126,8674710-8674790,
           8674896-8675048,8675129-8675185,8675293-8675569,
           8675634-8675749,8676372-8676523,8676627-8676816,
           8676935-8677345
          Length = 616

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 357 WQNALQCATAEDLFRGGRTHNKPCLDSPHNSPTLSIYYH 241
           W N  + AT ED F+ G++     L   HNS    I +H
Sbjct: 258 WVNLDRHATTEDAFQDGKSRLNLLLSKVHNSNVFYILFH 296


>02_03_0335 + 17882461-17882527,17882616-17884723
          Length = 724

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 491 CKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVEKNSS 625
           C TPI+ +SP  E  S  ++N L  +E  L    D +S +   SS
Sbjct: 526 CSTPILVTSPVGETISNLIRNGLFGVEDALRCCHDCLSALAAASS 570


>08_01_0894 -
           8797302-8797355,8798393-8799082,8799201-8799315,
           8799955-8800082
          Length = 328

 Score = 26.2 bits (55), Expect(2) = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 509 ASSPEVEWTSTELKNALRSIEWDLEDLEDTISI 607
           A+  E+     ELK AL + +W LE  E  IS+
Sbjct: 59  ANLEELSDLQRELKTALGTAKWQLEQFERAISM 91



 Score = 21.0 bits (42), Expect(2) = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 587 LEDTISIVEKNSSKFKID 640
           +ED IS VEK  + + ID
Sbjct: 113 MEDQISQVEKQINDYSID 130


>07_03_1339 +
           25879246-25881154,25881502-25881696,25881777-25881928,
           25882147-25882607,25883723-25883810,25884066-25884135,
           25884288-25884361,25884456-25884524,25884647-25884724,
           25884946-25885070,25885168-25885240,25885508-25885566,
           25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 500 PIIASSPEVEWTSTELKNALRSIEWDLEDLEDTI 601
           P++   P  EW  TELK+ LR  +  ++ L+D +
Sbjct: 5   PVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDL 38


>07_03_0446 -
           18285132-18285221,18285437-18285499,18285805-18285867,
           18286079-18286129,18286413-18286506,18286696-18286856,
           18287089-18287145,18287380-18287493,18287934-18287999,
           18288063-18288266,18289207-18289284,18289669-18289788,
           18290425-18290491,18290635-18290735,18290820-18290936,
           18292024-18292107,18292181-18292309,18292385-18292510,
           18292622-18292696,18292814-18292947,18293032-18293137,
           18293220-18293276,18294387-18294573,18295244-18295407,
           18296129-18296353,18296538-18296744,18297043-18297375,
           18297604-18297993
          Length = 1220

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +1

Query: 64  HYFF--SKFCFIHCTMIHF 114
           H+FF   K C IHC+++HF
Sbjct: 855 HFFFLWCKCCTIHCSLVHF 873


>11_04_0291 -
           15851647-15852252,15853995-15854136,15854666-15854881,
           15854957-15855052,15855147-15855259,15856516-15856727,
           15856842-15856939,15857066-15857186,15857291-15857508,
           15857657-15857837,15857919-15858207,15858303-15858367,
           15858480-15858591
          Length = 822

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 432 PV*SSLDEALFSIPCSLM*NANSAEWQNALQCATAEDLFRGG 307
           P+ S L   +   PC L  +A  A  QNA+  A  +DLF GG
Sbjct: 519 PLQSLLSAVVPLFPCELS-DARIAWSQNAILTAVVDDLFDGG 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,970
Number of Sequences: 37544
Number of extensions: 278906
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)