Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20526| Best HMM Match : SNARE (HMM E-Value=8.1e-11)                 83   1e-16
SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)                       32   0.34 
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)                      29   4.2  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.6  
SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   5.6  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   28   7.4  

>SB_20526| Best HMM Match : SNARE (HMM E-Value=8.1e-11)
          Length = 245

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/69 (52%), Positives = 46/69 (66%)
 Frame = +2

Query: 434 EVFKALNKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVE 613
           EV KA+   +GLY RWQ++   P      E  WT+ EL+N +RSIEWDLEDL++TI IVE
Sbjct: 8   EVQKAVTNVQGLYTRWQDLLNDPRTVGKDEYNWTTNELRNNIRSIEWDLEDLDETIGIVE 67

Query: 614 KNSSKFKID 640
            N  KF +D
Sbjct: 68  ANPRKFNMD 76


>SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 535 SPFYFWTTCNYW-SLTNLLPA*VQTTSLIQCFEHLTCLKLAR*SLILYPLLAHV 377
           SP YFW T  +W ++  LLP  +Q+ S+     ++T + + R   ++ PL  ++
Sbjct: 83  SPSYFWYTGEFWIAMCKLLPF-IQSVSVASSVLNMTAIAVDRFFAVVLPLRRYI 135


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 544 FSRSPFYFWTTCNYWSLTNLLPA*VQTTSLIQCFE-HLT 431
           F+ S F++ TT N +  T +    + T  L QCF  HLT
Sbjct: 370 FTASCFFYNTTTNSYDTTGITVGGLTTPELSQCFSTHLT 408


>SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)
          Length = 562

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 452 NKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRSIEWDLED-LEDTISIVEKNSSK 628
           N +   YL   +  +  +I      E+T  ELK  +RS+  ++ D ++ T+S++  N + 
Sbjct: 491 NLSSSEYLLLLKAKEPQLIRDLESEEYTEQELKVRIRSLNSEIRDAIDRTVSVL--NDNN 548

Query: 629 FKID 640
           F++D
Sbjct: 549 FRVD 552


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 467  LYLRWQEICKTPIIASSPEVEWTSTELKNALRSI---EWDLEDLEDTISIVE 613
            +Y++W +  +  ++  + ++ W S   +NAL+ I     D+  LE  + +VE
Sbjct: 1685 VYMKWVDTYQAQLVVLAAQISW-SESCENALQQIANNPKDMSPLEKVLKVVE 1735


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 637  NLEFXRVLLYNTYXIF*IFQIPFNAAQCIFQFSRSPFYFWTTCNYWSLTNLLPA*VQTTS 458
            N+ F    L +++ +F + +    A    F    +P  +WT+   W + N L   + T S
Sbjct: 960  NMLFGMAFLASSFVVFLVQERTNKAKHVQFVSGVTPIGYWTSAYLWDMINFL---IPTLS 1016

Query: 457  LI 452
            LI
Sbjct: 1017 LI 1018


>SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 409 SLILYPLLAHVKCKQRRVAKR 347
           SLI  P+LA+ KC QRR+ K+
Sbjct: 111 SLIKAPMLAYNKCSQRRLIKK 131


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +3

Query: 237 RGGNRLIVWGYCGVNLSRVCCEFSRPEISPL----RLRTAE-RFATLRCLH 374
           R  N+L+V+G+    + R   +F  P +SP+    +L  A+ R AT  C H
Sbjct: 87  RPNNKLVVFGHVTSVIQRETVDFGSPNVSPITCQEKLPDAKYRRATRTCKH 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,278,859
Number of Sequences: 59808
Number of extensions: 336759
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)