Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    33   0.13 
AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical...    30   1.2  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    29   2.8  

>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 583 FQIPFNAAQCIFQFSRSPFYFWTTCNYWSLTN 488
           FQ PF+  Q  F ++++PFY   T NYW   N
Sbjct: 437 FQQPFHQQQQQFYYTQAPFYGQQTQNYWGQQN 468


>AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical
           protein Y39B6A.41 protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 304 NSQQTLLRFTPQ*PHTINLLPPRCLPSFRVQFWFCHFFYSRTCIAA 167
           N + T+ +FT   P  I +L     P+ R QF F  F +  TC AA
Sbjct: 399 NIRATVSQFTQVPPIGIAVLEVFMFPTLRSQFGFTMFLFLATCCAA 444


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 250 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAV 152
           +L P C   +R + W C F  +R    A Y A+
Sbjct: 73  ILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAI 105


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 567 MLRSAFFNSVEVHSTSGLLAIIGVLQISCQRRYKPRVLFSALN 439
           + +S+FF  + +H+ + LL  + V  ++  R+Y+   LF A N
Sbjct: 42  VFKSSFFLIIRMHAITDLLMFLYVELVARPRKYRVHNLFEAAN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,996
Number of Sequences: 27780
Number of extensions: 258867
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)