Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 379 VKCKQRRVAKRSAVRNRRGLISG 311
           ++ +  R++   ++RNR GL+SG
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSG 392


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 140 VLVTYSYI-LCSNTSSRVKKVTKPKLNSERREATR 241
           +L T S + LC+ +  R   VT+P + S RR + R
Sbjct: 120 LLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKR 154


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 313 GRENSQQTLLRFT-PQ*PHTINLLPPRC 233
           G  NS+     F  PQ P+T+    PRC
Sbjct: 129 GTGNSRANTYNFDYPQVPYTVKNFHPRC 156


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 TSTELKNALR---SIEWDLEDLEDTISIVEKNSSKFKI 637
           T+T+ ++  R   S   DL+DLE+ ++ ++ N+   +I
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLTTIQHNNCLTRI 303


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 302 VLPPRNKSSAVAHCR 346
           V PPR K++   HC+
Sbjct: 338 VEPPRRKNNCPLHCK 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,957
Number of Sequences: 438
Number of extensions: 2861
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)