Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c19
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen...    34   0.070
At2g38580.1 68415.m04739 expressed protein ; expression supporte...    30   1.5  
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr...    29   2.0  
At2g24240.1 68415.m02895 potassium channel tetramerisation domai...    29   2.0  
At1g44010.1 68414.m05077 hypothetical protein                          29   2.6  

>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
           stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
           Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
           {Arabidopsis thaliana}; identical to cDNA syntaxin of
           plants 61 (SYP61) GI:16041649
          Length = 245

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +2

Query: 434 EVFKALNKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRSIEWDLEDLEDTISIVE 613
           E+  +++K +  + +W+ I  +P +     V   + EL     SIEW +++LE  I++  
Sbjct: 14  EIQDSIDKLQSTFHKWERI--SPDMGDQAHV---AKELVATCGSIEWQVDELEKAITVAA 68

Query: 614 KNSSKFKID 640
           K+ S + ID
Sbjct: 69  KDPSWYGID 77


>At2g38580.1 68415.m04739 expressed protein ; expression supported
           by MPSS
          Length = 377

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 386 EQGIENKASSSEL*TGEVFKALNKTRGLYLRWQE 487
           + G+ENK+  SE+   E  K L +  G YL+ +E
Sbjct: 70  DSGVENKSQGSEVLLEETIKQLREENGSYLQKEE 103


>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 953

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 434 EVFKALNKTRGLYLRWQEICKTPIIASSPEVEWTSTELKNALRSIE 571
           EV   +NK+R LY   QE+  T IIASS  ++     +  ALR +E
Sbjct: 841 EVKTKMNKSRSLY-DLQELLDTTIIASSGNLKGFEKYVDLALRCVE 885


>At2g24240.1 68415.m02895 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 554 ALRSIEWDLEDLEDTISIVEKNSSKFKI 637
           AL   EW+L  LED+I  V++NS  F +
Sbjct: 35  ALFDDEWNLSPLEDSILFVDRNSDCFAV 62


>At1g44010.1 68414.m05077 hypothetical protein
          Length = 227

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 265 PHTINLLPPRCLPSFRVQFWFC--HFFYSRTCIAAQYIAV 152
           PH +N++  RC+P  R   WFC   F  +   I A ++ V
Sbjct: 38  PHGVNIVE-RCIPCTREMEWFCFIEFVLNIVQIVAAFVVV 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,248
Number of Sequences: 28952
Number of extensions: 230023
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)