Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c18
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.21 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.9  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 401 KTIMGSYSGCNVLA*IWKKKNLACTRPVLDWNSNDYSIILC 523
           KT M ++S    +  +WK  N+    P  ++N N     LC
Sbjct: 396 KTTMSTFSDITFMRTVWKFFNIFLITPFYNFNENTIHSKLC 436


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 126 ANIKAIRAAIMTLTKRKNSP-ENEELIEN 209
           AN+   +     L KRK+SP + + +++N
Sbjct: 68  ANVSPSKTKFFNLIKRKDSPVQKKHILKN 96


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 42  IRETYL*YYVSFIKSISIFILVWS*FKTANIKAIRAAIMTLTKRKN 179
           ++ TY+ + V F+K ++I  + +     A +       MT   +KN
Sbjct: 48  VKRTYIEWGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQIKKN 93


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 42  IRETYL*YYVSFIKSISIFILVWS*FKTANIKAIRAAIMTLTKRKN 179
           ++ TY+ + V F+K ++I  + +     A +       MT   +KN
Sbjct: 48  VKRTYIEWGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQIKKN 93


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 126 ANIKAIRAAIMTLTKRKNSP-ENEELIEN 209
           AN+   +     L KRK+SP + + +++N
Sbjct: 68  ANVSPPKTKFFNLIKRKDSPVQKKHILKN 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,799
Number of Sequences: 336
Number of extensions: 3878
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)